Structure #118032

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr20
Strand	+
Position	37,552,068 - 37,552,163
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	73.61
Columns	96
Mean single MFE	-34.18
Consensus MFE	-23.52
Combinations/base pair	35 / 26 = 1.35
SCI	0.69
z-score	-1.5
RNA class probability	0.742403

This structure is part of cluster 62565

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 96
 Columns: 96
 Strand: +
 Mean pairwise identity:  73.61
 Mean single sequence MFE: -34.17
 Consensus MFE: -23.52
 Energy contribution: -24.52
 Covariance contribution:   1.00
 Mean z-score:  -1.50
 Structure conservation index:   0.69
 SVM decision value:   0.45
 SVM RNA-class probability: 0.742403
 Prediction: RNA

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>hg17.chr20/37552068-37552163
UUUGGCUCAAGAGUGAGGUGGGCCUUGCCGGCCCUGCUUGACUGGCCAAAGUCUGAUGAUUUUUCUUGUGGUCCAGACAGCCAAGCCCUCCUUGA
(((((((....(((.(((((((((.....))))).)))).))))))))))(((((((.((.......)).)).)))))...((((.....)))). ( -34.00)
>mm5.chr2/159324766-159324862
UUUGGCUCAGGAGUUGGACUAGGCCUGCCUGGUUCCGUUUCUGUAGCCAAAGUUUGAUGGUUUCUCUUGUGGUCCAGAUGGCCAGGGCCUCCCUGA
(((((((((((((..((((((((....))))))))..)))))).)))))))(((...(((..((......)).)))...)))(((((...))))). ( -39.20)
>rn3.chr3/149912427-149912523
UUUGGCUCAGGAAUUGGACCAGGCCCUGCUGGUUCUGCUUCUGUAGCCAAAGUCUGAUGGUUUCUCUUGUGGUCCAGAUGGCCAAGGCCUCCCUGA
((((((((((((...(((((((......)))))))...))))).)))))))(((((..(..(.(....).)..))))))(((....)))....... ( -33.40)
>canFam1.chr24/30705645-30705726
UUUGGCUCAAGAGUUGGGAUGGGCCUUGCUGGCGCUGCUCGGCUGGCCGAAGUCUGGUCCAGAUGGCCACCCCCUCCCUGA
......(((.(((..(((...((((...((((.(((((((((....))).)))..)))))))..)))).))).)))..))) ( -30.10)
>consensus
UUUGGCUCAAGAGUUGGACUAGGCCUUGCUGGCUCUGCUUCUCUAGCCAAAGUCUGAUGGUUUCUCUUGUGGUCCAGAUGGCCAAGCCCUCCCUGA
((((((((((((((.(((((((......))))))).))))))).)))))))..................(((((.....)))))............ (-23.52 = -24.52 +   1.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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