Structure #118033

Summary

Genome/Assembly hg17
Chromosome/Contig chr20
Strand -
Position 37,552,068 - 37,552,163
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 73.61
Columns 96
Mean single MFE -31.98
Consensus MFE -20.74
Combinations/base pair 30 / 22 = 1.36
SCI 0.65
z-score -2.16
RNA class probability 0.991237

This structure is part of cluster 62565

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 96
 Columns: 96
 Strand: +
 Mean pairwise identity:  73.61
 Mean single sequence MFE: -31.98
 Consensus MFE: -20.74
 Energy contribution: -21.30
 Covariance contribution:   0.56
 Mean z-score:  -2.16
 Structure conservation index:   0.65
 SVM decision value:   2.26
 SVM RNA-class probability: 0.991237
 Prediction: RNA

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>hg17.chr20/37552163-37552068
UCAAGGAGGGCUUGGCUGUCUGGACCACAAGAAAAAUCAUCAGACUUUGGCCAGUCAAGCAGGGCCGGCAAGGCCCACCUCACUCUUGAGCCAAA
((((((((((((((((((.(..((......((....)).......))..).))))))))).(((((.....))))).))))...)))))...... ( -37.32)
>mm5.chr2/159324862-159324766
UCAGGGAGGCCCUGGCCAUCUGGACCACAAGAGAAACCAUCAAACUUUGGCUACAGAAACGGAACCAGGCAGGCCUAGUCCAACUCCUGAGCCAAA
(((((..(((....))).))))).......................((((((.(((....(((...(((....)))..))).....))))))))). ( -27.20)
>rn3.chr3/149912523-149912427
UCAGGGAGGCCUUGGCCAUCUGGACCACAAGAGAAACCAUCAGACUUUGGCUACAGAAGCAGAACCAGCAGGGCCUGGUCCAAUUCCUGAGCCAAA
((((((((((....)))...(((((((...((.......)).......((((......((.......))..))))))))))).)))))))...... ( -30.80)
>canFam1.chr24/30705726-30705645
UCAGGGAGGGGGUGGCCAUCUGGACCAGACUUCGGCCAGCCGAGCAGCGCCAGCAAGGCCCAUCCCAACUCUUGAGCCAAA
((((((..(((((((((..((((....(..(((((....)))))...).))))...)).)))))))...))))))...... ( -32.60)
>consensus
UCAGGGAGGCCUUGGCCAUCUGGACCACAAGAGAAACCAUCAGACUUUGGCCACACAAGCAGAACCAGCAAGGCCCAGCCCAACUCCUGAGCCAAA
((((((.(((((.((((..((((.............(((........)))..............))))...)))).)))))...))))))...... (-20.74 = -21.30 +   0.56) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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