Structure #119062

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr20
Strand	+
Position	48,283,591 - 48,283,708
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	84.38
Columns	118
Mean single MFE	-46.93
Consensus MFE	-35.5
Combinations/base pair	36 / 31 = 1.16
SCI	0.76
z-score	-2.5
RNA class probability	0.970215

This structure is part of cluster 63128

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 118
 Columns: 118
 Strand: +
 Mean pairwise identity:  84.38
 Mean single sequence MFE: -46.94
 Consensus MFE: -35.50
 Energy contribution: -35.00
 Covariance contribution:  -0.50
 Mean z-score:  -2.50
 Structure conservation index:   0.76
 SVM decision value:   1.65
 SVM RNA-class probability: 0.970215
 Prediction: RNA

######################################################################

>hg17.chr20/48283591-48283708
UCUGAGCCUGCCAUGACUGGGGGGCCCUGCCCCCAAUUUCAGGCCCCCAGCCCUCCUUGAGGCCUCAGGGGCCUCCCAAGGUGGCCUCUUAAUCAUUGCCAGUUAAUUAAGGAGGUU
....(((((.((.(((((((((((((.((..........))))))))).(((..((((((((((.....))))))..)))).)))..............)))))).....))))))) ( -47.50)
>mm5.chr2/167784687-167784797
UCUGCGUGACCAAGGGGCCCUGCCCCCAAUUUUGGGCCCCCAGUCUUCCCUGGAGCCCCAGGGGCCUUCCAAGGUGGCCUCUUAAUCACUGCUGGUUAAUUAAGGAGGUU
.......(((...(((((((.............)))))))..)))..((((((....))))))((((....))))(((((((((((((....)))))).....))))))) ( -42.62)
>rn3.chr3/158763816-158763926
UCUGCAUGACCAAGGGGCCCUGCCCCCAAUUUUGGGCCCCCAACCUCCCCUGGAGCCCCAGGGGCCUUCCAAGGUGGCCUCUUAAUCACUGCUGGUUAAUUAAGGAGGUU
.............(((((((.............))))))).((((((((((((....)))))((((..(....).))))..(((((((....)))))))....))))))) ( -44.62)
>canFam1.chr24/39618634-39618752
UCUGAGCCUGCCAUGGCUGGGGGGGCCCUGCCCCCAGUUCCCGGCCCCCAGCCUUCCUUGAAGCCCUGGGGGCCUUCCAAGGUGGCCUCUUAAUCACUGCCGGUUAAUUAAGGAGGUU
.....((((((....))(((((((((...)))))).......(((((((((.((((...))))..)))))))))..)))))))((((((((((((......))))).....))))))) ( -53.00)
>consensus
UCUG_______CAUGACC_AAGGGGCCCUGCCCCCAAUUUCGGGCCCCCAGCCUUCCCUGAAGCCCCAGGGGCCUUCCAAGGUGGCCUCUUAAUCACUGCCGGUUAAUUAAGGAGGUU
...............(((..((((((...)))))).......((((((....((((...)))).....))))))......)))((((((((((((......))))).....))))))) (-35.50 = -35.00 +  -0.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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