Structure #119069

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr20
Strand	-
Position	48,283,591 - 48,283,708
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	84.38
Columns	118
Mean single MFE	-52.67
Consensus MFE	-44.23
Combinations/base pair	42 / 33 = 1.27
SCI	0.84
z-score	-3.36
RNA class probability	0.997966

This structure is part of cluster 63128

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 118
 Columns: 118
 Strand: +
 Mean pairwise identity:  84.38
 Mean single sequence MFE: -52.68
 Consensus MFE: -44.23
 Energy contribution: -42.42
 Covariance contribution:  -1.81
 Mean z-score:  -3.36
 Structure conservation index:   0.84
 SVM decision value:   2.97
 SVM RNA-class probability: 0.997966
 Prediction: RNA

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>hg17.chr20/48283708-48283591
AACCUCCUUAAUUAACUGGCAAUGAUUAAGAGGCCACCUUGGGAGGCCCCUGAGGCCUCAAGGAGGGCUGGGGGCCUGAAAUUGGGGGCAGGGCCCCCCAGUCAUGGCAGGCUCAGA
..((..((((((((........)))))))).((((..(((..((((((.....)))))).)))..))))))(((((((..((((((((......)))))))).....)))))))... ( -53.60)
>mm5.chr2/167784797-167784687
AACCUCCUUAAUUAACCAGCAGUGAUUAAGAGGCCACCUUGGAAGGCCCCUGGGGCUCCAGGGAAGACUGGGGGCCCAAAAUUGGGGGCAGGGCCCCUUGGUCACGCAGA
..................((.(((((((((.((((.(....)...(((((((((.((((((......)))))).)))......))))))..)))).)))))))))))... ( -51.20)
>rn3.chr3/158763926-158763816
AACCUCCUUAAUUAACCAGCAGUGAUUAAGAGGCCACCUUGGAAGGCCCCUGGGGCUCCAGGGGAGGUUGGGGGCCCAAAAUUGGGGGCAGGGCCCCUUGGUCAUGCAGA
..................(((.((((((((.((((.(((..(....(((((((....)))))))...)..)))((((........))))..)))).)))))))))))... ( -51.30)
>canFam1.chr24/39618752-39618634
AACCUCCUUAAUUAACCGGCAGUGAUUAAGAGGCCACCUUGGAAGGCCCCCAGGGCUUCAAGGAAGGCUGGGGGCCGGGAACUGGGGGCAGGGCCCCCCCAGCCAUGGCAGGCUCAGA
..(((.((((((((........))))))))..((((((((((..(((((...)))))))))))..(((((((((...((..(((....)))..))))))))))).)))))))...... ( -54.60)
>consensus
AACCUCCUUAAUUAACCAGCAGUGAUUAAGAGGCCACCUUGGAAGGCCCCUGGGGCUCCAAGGAAGGCUGGGGGCCCAAAAUUGGGGGCAGGGCCCCCC_AGUCAUG_______CAGA
..((((.(((((((........)))))))))))...(((((((..(((.....))))))))))..((((((((((((.............))))))))..)))).............. (-44.23 = -42.42 +  -1.81)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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