Structure #131417
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr3 |
Strand | + |
Position | 159,072,905 - 159,073,002 |
Number of sequences | 4 |
Organisms | human, dog, mouse, rat |
Mean pairwise identity | 79.97 |
Columns | 107 |
Mean single MFE | -23.06 |
Consensus MFE | -17.76 |
Combinations/base pair | 32 / 23 = 1.39 |
SCI | 0.77 |
z-score | -3.57 |
RNA class probability | 0.999733 |
This structure is part of cluster 72139
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 107 Columns: 107 Strand: + Mean pairwise identity: 73.73 Mean single sequence MFE: -23.05 Consensus MFE: -17.76 Energy contribution: -16.32 Covariance contribution: -1.44 Mean z-score: -3.57 Structure conservation index: 0.77 SVM decision value: 5.39 SVM RNA-class probability: 0.999985 Prediction: RNA ###################################################################### >hg17.chr3/159072905-159073002 CACAGGAAAGAAAAGCAGGAACUUUUCUUUCUUCCCUUUUUUUAAAAAACCACAGACAGAUUUUCUCUGCUUCUCUCCUUGCCACCUUGCCUGUGAC ((((((..(((.(((((((((....(((.(((....((((.....))))....))).)))..))).)))))).))).............)))))).. ( -20.86) >canFam1.chr23/54362776-54362883 CGCAGGAAAGAAAGGCAGGAACUUUGCUUUCUUUCUUUCUUUUUUUUUUUUUUUAAAAACCACAGCCAGGGUUUCUCUGCUUGUCUCCCUCCCACCUGGCCUGCGAC (((((((((((((((.(((((......))))).)))))))))).....................((((((........................))))))))))).. ( -30.16) >mm5.chr3/67010886-67010980 CACAGGAAAGGAAAGCAGAAACUUUUCUUUCUUCUCUCUUUUUAAAGCCACAGACAGCUUUUCUUUGCUCUCUCCUUCCCACCCUGCCUGUGAC ((((((((((((.((.(((((......))))).)).)))))).........(((.(((........))).))).............)))))).. ( -21.50) >rn3.chr2/156533733-156533827 CACAGGAAAAGAAAGCAGAAACUUUUCUUUCUUCUCUCUUUUUAAAGCCACAGACAGCUUUUCUCUGCUCCCUCCUUCCCACCCUGCCUGUGAC ((((((((((((.((.(((((......))))).)).)))))).(((((........))))).........................)))))).. ( -19.70) >consensus CACAGGAAAGAAAAGCAGAAACUUUUCUUUCUUCCCUCUUUUUA____________AAACCACAGACAGCUUUUCUCUGC_UCUCUCCUUCCCACCCUGCCUGUGAC ((((((((((((.((.(((((......))))).)).))))))........................((((.....))))....................)))))).. (-17.76 = -16.32 + -1.44)