Structure #131418

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr3
Strand	-
Position	159,072,905 - 159,073,002
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	79.97
Columns	107
Mean single MFE	-28.7
Consensus MFE	-20.11
Combinations/base pair	38 / 26 = 1.46
SCI	0.7
z-score	-3.11
RNA class probability	0.99887

This structure is part of cluster 72139

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 107
 Columns: 107
 Strand: +
 Mean pairwise identity:  73.73
 Mean single sequence MFE: -28.70
 Consensus MFE: -20.11
 Energy contribution: -17.93
 Covariance contribution:  -2.19
 Mean z-score:  -3.11
 Structure conservation index:   0.70
 SVM decision value:   4.86
 SVM RNA-class probability: 0.999957
 Prediction: RNA

######################################################################

>hg17.chr3/159073002-159072905
GUCACAGGCAAGGUGGCAAGGAGAGAAGCAGAGAAAAUCUGUCUGUGGUUUUUUAAAAAAAGGGAAGAAAGAAAAGUUCCUGCUUUUCUUUCCUGUG
(((((.......))))).(((((((((((((.(((..(((.(((....((((((....)))))).))).)))....))))))))..))))))))... ( -28.70)
>canFam1.chr23/54362883-54362776
GUCGCAGGCCAGGUGGGAGGGAGACAAGCAGAGAAACCCUGGCUGUGGUUUUUAAAAAAAAAAAAAAAGAAAGAAAGAAAGCAAAGUUCCUGCCUUUCUUUCCUGCG
..(((((((((((.(.(..(....)...).......))))))).........................(((((((((...(((.......))))))))))))))))) ( -29.10)
>mm5.chr3/67010980-67010886
GUCACAGGCAGGGUGGGAAGGAGAGAGCAAAGAAAAGCUGUCUGUGGCUUUAAAAAGAGAGAAGAAAGAAAAGUUUCUGCUUUCCUUUCCUGUG
..((((((.(((..(((..(.(((.(((........))).))).)..)))......(((((.(((((......))))).)))))))).)))))) ( -27.30)
>rn3.chr2/156533827-156533733
GUCACAGGCAGGGUGGGAAGGAGGGAGCAGAGAAAAGCUGUCUGUGGCUUUAAAAAGAGAGAAGAAAGAAAAGUUUCUGCUUUCUUUUCCUGUG
..((((((..........(((((..((((((((....((.(((....((((....))))...))).)).....))))))))..))))))))))) ( -29.70)
>consensus
GUCACAGGCAAGGUGGGAAGGAGAGA_GCAGAGAAAAGCUGUCUGUGGCUU____________UAAAAAAAGAGAAGAAAGAAAAGUUCCUGCUUUCCUUUCCUGUG
..((((((.((((..((.(((((.....(((.......)))(((....(((....................))).....)))....))))).))..)))).)))))) (-20.11 = -17.93 +  -2.19)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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