Structure #134560
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr4 |
| Strand | - |
| Position | 12,685,808 - 12,685,928 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 92.83 |
| Columns | 120 |
| Mean single MFE | -28.2 |
| Consensus MFE | -23.52 |
| Combinations/base pair | 39 / 36 = 1.08 |
| SCI | 0.83 |
| z-score | -2.7 |
| RNA class probability | 0.997845 |
This structure is part of cluster 73982
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 92.83 Mean single sequence MFE: -28.20 Consensus MFE: -23.52 Energy contribution: -24.48 Covariance contribution: 0.96 Mean z-score: -2.70 Structure conservation index: 0.83 SVM decision value: 2.94 SVM RNA-class probability: 0.997845 Prediction: RNA ###################################################################### >hg17.chr4/12685928-12685808 AAGCAAGUUGUUUUAGUGAUGUCAUCAUUUGGAACUUCUAACUAUGAUAUCACUUUUGACAGAAUUAAUGUGGAAUUAAUACCAUAUGUACAAGCAUUAAUAGGAAUUGACUUUGAACAC ..((...(((((..(((((((((((...((((.....))))..)))))))))))...))))).....((((((........))))))......))......................... ( -26.60) >canFam1.chr3/24919169-24919289 AACCAAGUUGUUUUAGUGAUGUCAUCAUUUGGAACUUCUAACUAUGAUAUCACUUUUGACAGAAUUAAUGUGGAAUUAAUACCAUAUGUACAAGCAUUAAUAGGUAUUGACUUUGAACAC ..(((..(((((..(((((((((((...((((.....))))..)))))))))))...)))))........)))..((((((((..((((....)))).....)))))))).......... ( -29.20) >mm5.chr5/39827048-39826928 AACCAAGUUGUUUUAGUGACGUCAUCAUUUGGAACUUCAAACUAUGAUAUCACUUUUGACAGAAUUAAUGUGGAAUUAAUACCAUAUGUAAGAGCAUUAAUAGGUACUGACUUUGAACAC .(((...(((((..(((((..((((..(((((....)))))..))))..)))))...))))).....((((((........))))))...............)))............... ( -24.80) >rn3.chr14/37361851-37361971 AACCAAGUUGUUUUAGUGAUGUCAUCAUUUGGAACUUCUAACUAUGAUAUCACUUUUGACAGAAUUAAUGUAGAAUUAAUACCAUAUGUAAGACCAUUAAUAGGUAUUGACUUUGUACAC .......(((((..(((((((((((...((((.....))))..)))))))))))...)))))......((((.((((((((((.(((.(((.....))))))))))))))..)).)))). ( -29.10) >galGal2.chr4/12683379-12683498 AACAAAGUUGUUUUAGUGAUGUCAUAAUUUGGACUUUCAGAGUAUGAUAUCACUUUUGACAGAAUUAAUGCAGAAUUAAUACCAUAUGUAUAAGCAUUAAUAGGUAUUGAAUUGAACAC ..(((..(((((..((((((((((((.(((((....))))).))))))))))))...))))).............((((((((..((((....)))).....)))))))).)))..... ( -31.30) >consensus AACCAAGUUGUUUUAGUGAUGUCAUCAUUUGGAACUUCUAACUAUGAUAUCACUUUUGACAGAAUUAAUGUGGAAUUAAUACCAUAUGUAAAAGCAUUAAUAGGUAUUGACUUUGAACAC .......(((((..(((((((((((...((((.....))))..)))))))))))...)))))........((((.((((((((..((((....)))).....)))))))).))))..... (-23.52 = -24.48 + 0.96)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
