Structure #134594

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr4
Strand	-
Position	12,746,362 - 12,746,481
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	84.15
Columns	120
Mean single MFE	-43.22
Consensus MFE	-31.06
Combinations/base pair	40 / 29 = 1.38
SCI	0.72
z-score	-3
RNA class probability	0.989002

This structure is part of cluster 73986

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  84.15
 Mean single sequence MFE: -43.22
 Consensus MFE: -31.06
 Energy contribution: -31.06
 Covariance contribution:   0.00
 Mean z-score:  -3.00
 Structure conservation index:   0.72
 SVM decision value:   2.14
 SVM RNA-class probability: 0.989002
 Prediction: RNA

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>hg17.chr4/12746481-12746362
CAUCGUGGCAGCCUCUACAAGGGCACAGAUGCCCUGGAAAAUCAUUUUGGGGGUGUUUUCCCUGGCUGUGAAUGGUUCCUCAAUGUGGAGGCAACCACCCAUGUGCUUAAAAAUGAAAA
....((((..(((((((((((((((....))))))((((..((((.(..((((.....))))..)..))))....))))....)))))))))..))))..................... ( -46.10)
>canFam1.chr3/24971449-24971568
CAUCGUGGCAGCCUCCACGAGGGCACAGAUGCCCUGGAAAAUGAUUUUGGGGGUGUUUUCCCUGGCUGUGAAUAGUCCAUCAAUGUGGAGGCGACCACACACGUGCUUAAAAAUGAAAA
....((((..(((((((((((((...(((((((((.((((....)))).))))))))).))))(((((....)))))......)))))))))..))))...(((........))).... ( -47.30)
>mm5.chr5/39887181-39887065
CAUCAUGGCAGCCCCACAGGGCACAGAUGCCCUGGGAAAUGAUCUCGGGGAGUUUCUUUGGCCGUGAAUGGCUCCUCAAUGUGCAGGCGACCACACACAUGUGUAAAAAAUGAAAA
..(((((((.((((....))))..(((..((((((((.....))))))))....)))...)))))))..(((.((((.....).))).).))((((....))))............ ( -40.30)
>rn3.chr14/37426401-37426516
CAUCAUGGCAGCCCCACAGGGCACAGAUGCCCUGGGAAAUGAUCUCAGGGUGUUUCUUUGGCUGUGAAUGGCUUCUCAAUGUGCAGGCGACCACACACACGUGUAAAAAUGAAAA
..((((((..(((((...))(((((((((((((((((.....)))))))))))).....((((......))))......))))).)))..))((((....))))....))))... ( -39.20)
>consensus
CAUCAUGGCAGCCCC_ACA_GGGCACAGAUGCCCUGGAAAAUGAUCUCGGGGGG__UUUCCCUGGCUGUGAAUGGCUCCUCAAUGUGCAGGCGACCACACACAUGCGUAAAAA_UGAAAA
....((((..(((((((((((((........((((((((.....)))))))).......))))((((......))))......)))))))))..))))...................... (-31.06 = -31.06 +   0.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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