Structure #134603

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr4
Strand	-
Position	12,746,401 - 12,746,521
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	82.05
Columns	120
Mean single MFE	-36.37
Consensus MFE	-26.92
Combinations/base pair	36 / 31 = 1.16
SCI	0.74
z-score	-2.51
RNA class probability	0.983093

This structure is part of cluster 73986

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.05
 Mean single sequence MFE: -36.38
 Consensus MFE: -26.92
 Energy contribution: -26.55
 Covariance contribution:  -0.37
 Mean z-score:  -2.51
 Structure conservation index:   0.74
 SVM decision value:   1.93
 SVM RNA-class probability: 0.983093
 Prediction: RNA

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>hg17.chr4/12746521-12746401
UCUACCCCUUCCACCGAAAUUUAAUCCAACUCAAUUAAAACAUCGUGGCAGCCUCUACAAGGGCACAGAUGCCCUGGAAAAUCAUUUUGGGGGUGUUUUCCCUGGCUGUGAAUGGUUCCU
.....((.((((((.((..((((((........))))))...)))))((((((......((((...(((((((((.((((....)))).))))))))).))))))))))))).))..... ( -32.30)
>canFam1.chr3/24971488-24971608
UCUACCCCUUCCAUUGAAAUUCAAUCCAAUGCAAUUAAAACAUCGUGGCAGCCUCCACGAGGGCACAGAUGCCCUGGAAAAUGAUUUUGGGGGUGUUUUCCCUGGCUGUGAAUAGUCCAU
..(((((((......((((((...((((..............((((((......))))))(((((....)))))))))....))))))))))))).......((((((....))).))). ( -34.10)
>mm5.chr5/39887218-39887105
UCUACUCUGCCAUUGAAACACUCCAACUCAAUUAAAACAUCAUGGCAGCCCCACAGGGCACAGAUGCCCUGGGAAAUGAUCUCGGGGAGUUUCUUUGGCCGUGAAUGGCUCCU
........((((((((...........))))........(((((((.((((....))))..(((..((((((((.....))))))))....)))...))))))).)))).... ( -37.80)
>rn3.chr14/37426440-37426553
UCUAUUCUGCCAUUGAAAUACUCCGACUCAAUUAAAACAUCAUGGCAGCCCCACAGGGCACAGAUGCCCUGGGAAAUGAUCUCAGGGUGUUUCUUUGGCUGUGAAUGGCUUCU
.((((((.((((..(((((((................((((.((...((((....)))).)))))).(((((((.....))))))))))))))..))))...))))))..... ( -41.30)
>consensus
UCUACCC_UGCCAUUGAAAU__AAUCCAACUCAAUUAAAACAUCAUGGCAGCCCC_ACA_GGGCACAGAUGCCCUGGAAAAUGAUCUCGGGGGG__UUUCCCUGGCUGUGAAUGGCUCCU
.(((.((..((((..((((.....................((((.((...((((......)))).))))))((((((((.....))))))))....))))..))))...)).)))..... (-26.92 = -26.55 +  -0.37)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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