Structure #134611
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr4 |
| Strand | - |
| Position | 12,746,441 - 12,746,560 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 84.53 |
| Columns | 120 |
| Mean single MFE | -24.21 |
| Consensus MFE | -14.47 |
| Combinations/base pair | 26 / 23 = 1.13 |
| SCI | 0.6 |
| z-score | -2.06 |
| RNA class probability | 0.593525 |
This structure is part of cluster 73986
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 84.53 Mean single sequence MFE: -24.21 Consensus MFE: -14.47 Energy contribution: -14.79 Covariance contribution: 0.31 Mean z-score: -2.06 Structure conservation index: 0.60 SVM decision value: 0.12 SVM RNA-class probability: 0.593525 Prediction: RNA ###################################################################### >hg17.chr4/12746560-12746441 CAAAAUUACAGAAUUAUUAGUUCUUGAAAAUGCACGACUUCUACCCCUUCCACCGAAAUUUAAUCCAACUCAAUUAAAACAUCGUGGCAGCCUCUACAAGGGCACAGAUGCCCUGGAAA .....(((.(((((.....))))))))...........((((....((.((((.((..((((((........))))))...)))))).))........((((((....)))))))))). ( -18.90) >canFam1.chr3/24971528-24971647 CAAAAUUACAGAAUUAUUAGUUCUUGAAAAUACAGUGCUUCUACCCCUUCCAUUGAAAUUCAAUCCAAUGCAAUUAAAACAUCGUGGCAGCCUCCACGAGGGCACAGAUGCCCUGGAAA .........(((((.....)))))((((....(((((.............)))))...)))).((((..............((((((......))))))(((((....))))))))).. ( -24.62) >mm5.chr5/39887257-39887143 CGAAACUAUAGAAUUAUUAGUUCUUGAAAAAUAUACUAGUCUACUCUGCCAUUGAAACACUCCAACUCAAUUAAAACAUCAUGGCAGCCCCACAGGGCACAGAUGCCCUGGGAA ........((((....(((((..((....))...)))))))))..(((((((.((.......................)))))))))..((.(((((((....))))))))).. ( -26.10) >rn3.chr14/37426478-37426591 CUAAACUAUAGAAUUAUUAGUUCUUGAAAAUAUACUAGUCUAUUCUGCCAUUGAAAUACUCCGACUCAAUUAAAACAUCAUGGCAGCCCCACAGGGCACAGAUGCCCUGGGAA .........(((((.((((((...(....)...))))))..)))))(((((.((.......................)))))))....((.(((((((....))))))))).. ( -27.20) >consensus CAAAACUACAGAAUUAUUAGUUCUUGAAAA_UACACUA_GUCUACCC_UGCCAUUGAAAU__AAUCCAACUCAAUUAAAACAUCAUGGCAGCCCC_ACA_GGGCACAGAUGCCCUGGAAA .........(((((.....)))))................((((...(((((((.((.........................))))))))).........(((((....))))))))).. (-14.47 = -14.79 + 0.31)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
