Structure #140512

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr4
Strand	+
Position	135,577,246 - 135,577,328
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	85.57
Columns	82
Mean single MFE	-18.65
Consensus MFE	-13.69
Combinations/base pair	26 / 23 = 1.13
SCI	0.73
z-score	-3.21
RNA class probability	0.988017

This structure is part of cluster 77493

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 82
 Columns: 82
 Strand: +
 Mean pairwise identity:  85.57
 Mean single sequence MFE: -18.65
 Consensus MFE: -13.69
 Energy contribution: -16.62
 Covariance contribution:   2.94
 Mean z-score:  -3.21
 Structure conservation index:   0.73
 SVM decision value:   2.10
 SVM RNA-class probability: 0.988017
 Prediction: RNA

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>hg17.chr4/135577246-135577328
UGUCUACCCAUGCAAAGGAUGUGAAUUAUUACAUCAUCAUUCACAUCCUGUUGUGUUGUGCUUCUUAAAUAUCAUCUUUUUG
....(((..(((((((((((((((((.((......)).))))))))))).)))))).)))...................... ( -17.80)
>canFam1.chr19/46120527-46120445
CAUCUAACAAUGCAAAGGGUAUGAAUUAUUACAUCAUAAUUCACAUCCUGUUGUGUUGUGCUUCUUAAAUAUCAUCUUUUUG
......((((((((((((((.((((((((......)))))))).))))).)))))))))....................... ( -20.50)
>mm5.chr3/46524447-46524529
UAUCUAACAAUGCAAUGGGUGUGAAUUAUUACAUCAUAAUUCAUACCCUGUUGUGCUAUGUUUCUUAAAAAUCAUCAUUUUG
.....((((..(((..(((((((((((((......))))))))))))).....)))..)))).................... ( -21.40)
>rn3.chr2/134205828-134205910
CAUUUAACAAUGCAAUGGGUGUGAAUUAUUACAUCAUAUUUCAUACCGUGAUUUCUUAUGUUUCUUAAAAAUCAUCAUUUUG
.............((((((((((((.(((......))).))))))))(((((((.(((.......))))))))))))))... ( -14.90)
>consensus
CAUCUAACAAUGCAAAGGGUGUGAAUUAUUACAUCAUAAUUCACACCCUGUUGUGUUAUGCUUCUUAAAAAUCAUCAUUUUG
......(((((((((((((((((((((((......)))))))))))))).)))))))))....................... (-13.69 = -16.62 +   2.94)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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