Structure #142560
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr4 |
Strand | - |
Position | 173,327,586 - 173,327,680 |
Number of sequences | 5 |
Organisms | human, dog, mouse, rat, chicken |
Mean pairwise identity | 70.38 |
Columns | 108 |
Mean single MFE | -28.78 |
Consensus MFE | -20.68 |
Combinations/base pair | 34 / 24 = 1.42 |
SCI | 0.72 |
z-score | -4.17 |
RNA class probability | 0.999539 |
This structure is part of cluster 78719
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 108 Columns: 108 Strand: + Mean pairwise identity: 70.38 Mean single sequence MFE: -28.78 Consensus MFE: -20.68 Energy contribution: -22.56 Covariance contribution: 1.88 Mean z-score: -4.17 Structure conservation index: 0.72 SVM decision value: 3.70 SVM RNA-class probability: 0.999539 Prediction: RNA ###################################################################### >hg17.chr4/173327680-173327586 AAUUAAGAUUUCAACUUGCUUGAACAGAAUCUCAUUUCCUUGAAAUACAGCAGGAGCAGUAUUUCAAGGAAAUGAGAUUCAUCUUCACACUGAG ....((((((((((.....)))))..((((((((((((((((((((((.((....)).)))))))))))))))))))))))))))......... ( -38.70) >canFam1.chr25/25774222-25774128 AAUUAAGAUUUCAACUUGCUUGAACAGAAUCUCAUUUCCUUGAAAUACAGUAGAAGCAGUAUUUCAAGGAAAUGAUAUUCAUCUUCACACUGAG ....((((((((((.....)))))..((((.(((((((((((((((((.((....)).))))))))))))))))).)))))))))......... ( -30.60) >mm5.chr8/0-94 AAUUAAAAUUUCUACUUGCUUUAGCAGUAUCUCAUUUCCUUGAGAUGAAGCAGGAGUGAUGCUUCAAGGAAAUGAGAUUCAUCUUCAUACAGAG ..........(((...(((....)))(.(((((((((((((((.....((((.......))))))))))))))))))).)..........))). ( -27.80) >rn3.chr16/34798804-34798715 AAUAUUUCUACUUGCUUUAACAGAAUCCCAUUUCCUUGGGAUGAAGUGAAGUGAUUCUUCAAGGAAAUGAGAUUCAUUUUCAUACAGAG ......(((..(..(((((.....((((((......))))))....)))))..)........(((((((.....)))))))....))). ( -22.30) >galGal2.chr4/43456058-43455950 AAUAAAGAUUUCAAGCUGUUAAGGGGCAGAGGGGAGAAAAAGAUCUGCUCUCCUUGUAAUAUCUCACUAGCAGCAUUCCAGAGAAACAGGCUUCCAUUUCAUGCUGAG ..............(((((((..(((..((((((((...........)))))))).......)))..)))))))....(((.((((..((...)).))))...))).. ( -24.50) >consensus AAUUAAGAUUUCAACUUGCUU______________GAACAGAAUCUCAUUUCCUUGAAAUAAAGCAGAAGCAGUAUUUCAAGGAAAUGAGAUUCAUCUUCAUACUGAG ........................................((((((((((((((((((((((.((....)).)))))))))))))))))))))).............. (-20.68 = -22.56 + 1.88)