Structure #144734

Summary

Genome/Assembly hg17
Chromosome/Contig chr5
Strand +
Position 32,415,147 - 32,415,259
Number of sequences 6
Organisms human, mouse, rat, dog, chicken, fugu, zebrafish
Mean pairwise identity 66.22
Columns 120
Mean single MFE -22.44
Consensus MFE -13.16
Combinations/base pair 20 / 17 = 1.18
SCI 0.59
z-score -1.57
RNA class probability 0.906902

This structure is part of cluster 80020

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 6
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  66.22
 Mean single sequence MFE: -22.44
 Consensus MFE: -13.16
 Energy contribution: -13.83
 Covariance contribution:   0.67
 Mean z-score:  -1.57
 Structure conservation index:   0.59
 SVM decision value:   1.05
 SVM RNA-class probability: 0.906902
 Prediction: RNA

######################################################################

>hg17.chr5/32415147-32415259
AAUACCACCGUUCAAUGGAAGCUCAGAUAAAAACAAAAACAAUCACACUUAAAAUUGGAUUCAAUGAGCUGCCAUUUACAGCAGUAUUUUAUGCCAGGGUUAGUAUUUAAAA
(((((.(((((..(((((.(((((.(((.............))).........((((....))))))))).))))).)).(((........)))...)))..)))))..... ( -20.12)
>mm5.chr15/92056188-92056076
AAUACCACUGUUCAAUGGAAGCUCAGAUUAAAAAUAAAAAUAAUUACGUUUAAAUUGGUUUCAAUGAGCUGCCAUUUACAGCAAUAUUUUAUGCCAGAGUUAGUAUUUAAAA
.......((((..(((((.(((((...(((((..(((......)))..)))))((((....))))))))).))))).)))).....((..((((........))))..)).. ( -18.50)
>canFam1.chr4/13050646-13050529
AAUACCACUGUUCAAUGGAAGCUCAGAUAAAAAUAAAACAAAAAUAACCACACUUAAAAUUAGAUUCAAUGAGCUGCCAUUUACAGCAGUAUUUUAUGCCAGGGUUAGUAUUUAAAA
(((((..((((..(((((.((((((............................................)))))).))))).))))..)))))........................ ( -18.70)
>galGal2.chrZ_random/9013928-9014040
AACACCACUGUUCAAUGGAAGCUCAGAUCCAAGACUGAAACAAAUAAUUUUACAAGUUUACUCCAUGAGCUGCCAUUUACAGCAGUAUUUUAUACAGGGUUAGUAAUUUAAG
(((.((.((((..(((((.((((((......(((((.(((........)))...)))))......)))))).))))).))))..((((...)))).)))))........... ( -23.90)
>fr1.chrUn/60595448-60595540
AACGCUACUGUGAUAGUGGAAGCUCGAGUUUGGUCUGAAAACUCUGCAGACAGCUGCCAUUCCCAGUAGGCUCGUGCCUCACAGUUAGUAAA
...((((((((((((.(((......((((((.......)))))).((((....)))).....))).))(((....))))))))).))))... ( -29.90)
>danRer1.chr5/21624661-21624766
AACACCACUGUUCACAAUGGAAGCUUUUAAUGGGAUUUUAAUCAGCUGGGCCAAUUGGUUUCCAUAAGCUGCCAUUUCCAGCAGUAUUUUACCUCACCAUUAGUA
......((((((...(((((.(((((...((((((..(((((..((...))..))))).))))))))))).)))))...)))))).................... ( -23.50)
>consensus
AACACCACUGUU__CAAUGGAAGCUCAGA_UAAAAAC_____AAAAACAACUACACUUAAAAUUGGAUUCAAUGAGCUGCCAUUUACAGCAGUAUUUUAUGCCAGGGUUAGUAUUUAAAA
......((((((...(((((.((((((.............................................)))))).)))))...))))))........................... (-13.16 = -13.83 +   0.67) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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