Structure #144746

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	32,415,219 - 32,415,334
Number of sequences	6
Organisms	human, mouse, rat, dog, chicken, fugu, zebrafish
Mean pairwise identity	69.15
Columns	119
Mean single MFE	-32.2
Consensus MFE	-14.81
Combinations/base pair	26 / 19 = 1.37
SCI	0.46
z-score	-3.41
RNA class probability	0.999206

This structure is part of cluster 80020

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 6
 Slice: 1 to 119
 Columns: 119
 Strand: +
 Mean pairwise identity:  69.15
 Mean single sequence MFE: -32.20
 Consensus MFE: -14.81
 Energy contribution: -15.20
 Covariance contribution:   0.39
 Mean z-score:  -3.41
 Structure conservation index:   0.46
 SVM decision value:   3.43
 SVM RNA-class probability: 0.999206
 Prediction: RNA

######################################################################

>hg17.chr5/32415334-32415219
ACACAGGUCAAGGUUCACAGGGGAUCAAGAAAUAUUAUUCUUGUAUAAUCUGUUUACUUUGACCUAAAUACCAGCUUUUAAAUACUAACCCUGGCAUAAAAUACUGCUGUAAAUG
....((((((((((..(((((..((((((((......)))))).))..)))))..)))))))))).....((((..((........))..)))).......(((....))).... ( -30.30)
>mm5.chr15/92056148-92056263
ACAUAGGUCAAGGUUCACAGGGGAUCAAGAAAUAUUAUUCUUGUAUAAUCUGUUUACUUUGACCUAAAUACUAGCUUUUAAAUACUAACUCUGGCAUAAAAUAUUGCUGUAAAUG
...(((((((((((..(((((..((((((((......)))))).))..)))))..)))))))))))..........................((((........))))....... ( -31.80)
>rn3.chr2/196661525-196661640
ACACAGGUCAAGGUUCACAGGGGAUCAAGAAAUAUUAUUCUUGUAUAAUCUGUUUACUUUGACCUAAAUACUAGCUUUUAAAUACUAACUCUGGCAUAAAAUACUGCUGUAAAUG
....((((((((((..(((((..((((((((......)))))).))..)))))..))))))))))...........................((((........))))....... ( -29.60)
>galGal2.chrZ_random/9014112-9014001
ACAUGGGUCAAAGUGUACAGGGGAUCAAGAAAUGUUAUUCUUGUAUAACCUGGGCACUUUGACUUCUACCACCUUAAAUUACUAACCCUGUAUAAAAUACUGCUGUAAAUG
....(((((((((((..((((..((((((((......)))))).))..))))..))))))))))).............((((.......((((...))))....))))... ( -31.30)
>fr1.chrUn/60595614-60595505
CCCGGGGUCAGGGUUUAGAAGAUGGCAAGAAAGCUUCUGCUUCCUUGUGCAUCUUGCAAACUUUGAACUCCCGUUUUACUAACUGUGAGGCACGAGCCUACUGGGAAUG
((((((((((((((((..(((((((((((.((((....)))).))))).))))))..)))))))).)).)))(((((((.....)))))))...........))).... ( -43.00)
>danRer1.chr5/21624835-21624733
ACUGAGGUCAGGGUUUACAAGGUUACAAAGGAGCCAUUCCGAGUGAAUCUUGCAAACUUUGAACUCUUGUACUAAUGGUGAGGUAAAAUACUGCUGGAAAUG
...(((.(((((((((.(((((((.((..((((...))))...))))))))).))))))))).))).....(((..((((........))))..)))..... ( -27.20)
>consensus
ACACAGGUCAAGGUUCACAGGGGAUCAAGAAAUAUUAU____UCUUGUAUAACCUGUUUACUUUGACCUA_AUACCAGCUUUUAAAUACUAACUCUGGCAUAAAAUACUGCUGUAAAUG
....((((((((((...((((....(((((............))))).....))))...)))))))))).................................................. (-14.81 = -15.20 +   0.39) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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