Structure #144747

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	32,415,259 - 32,415,374
Number of sequences	6
Organisms	human, mouse, rat, dog, chicken, fugu, zebrafish
Mean pairwise identity	62.05
Columns	120
Mean single MFE	-27.32
Consensus MFE	-7.19
Combinations/base pair	21 / 16 = 1.31
SCI	0.26
z-score	-3.31
RNA class probability	0.975166

This structure is part of cluster 80020

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 6
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  62.05
 Mean single sequence MFE: -27.32
 Consensus MFE:  -7.19
 Energy contribution:  -7.42
 Covariance contribution:   0.23
 Mean z-score:  -3.31
 Structure conservation index:   0.26
 SVM decision value:   1.74
 SVM RNA-class probability: 0.975166
 Prediction: RNA

######################################################################

>hg17.chr5/32415259-32415374
GCUGGUAUUUAGGUCAAAGUAAACAGAUUAUACAAGAAUAAUAUUUCUUGAUCCCCUGUGAACCUUGACCUGUGUUCAUUUAAAACAGUAAACUUAAAAAAAAAAAGUCUGCCUA
...((((..((((((((.((..((((...((.((((((......))))))))...))))..)).))))))))((((.......))))......................)))).. ( -24.80)
>mm5.chr15/92056298-92056188
GCUAGUAUUUAGGUCAAAGUAAACAGAUUAUACAAGAAUAAUAUUUCUUGAUCCCCUGUGAACCUUGACCUAUGUUCAUACAAAACAGUAAACUGAAAAAAAUCUGCCUA
((..((((.((((((((.((..((((...((.((((((......))))))))...))))..)).)))))))).....))))....(((....)))..........))... ( -25.90)
>canFam1.chr4/13050761-13050646
GCUGGUAUUUUAGGUCAAAGUAAACAGAUUAUACAAGAAUAAUAUUUCUUGAUCCCCUGUGAACCUUGACCUAUGUUCAUUUAAAACAGUAAACUUAAAAAAAAAAAUCUGCCUA
...((((...((((((((.((..((((...((.((((((......))))))))...))))..)).))))))))((((.......)))).....................)))).. ( -25.20)
>galGal2.chrZ_random/9014040-9014144
GUGGUAGAAGUCAAAGUGCCCAGGUUAUACAAGAAUAACAUUUCUUGAUCCCCUGUACACUUUGACCCAUGUUCACUUGUAACAAUAAAUACAGUAUCUUUCUA
((((.....(((((((((..((((..((.((((((......))))))))..))))..)))))))))......))))(((((........))))).......... ( -30.60)
>fr1.chrUn/60595540-60595645
ACGGGAGUUCAAAGUUUGCAAGAUGCACAAGGAAGCAGAAGCUUUCUUGCCAUCUUCUAAACCCUGACCCCGGGUUGGUCCAGGUAUCUCACAGACGGGUACUUA
.((((.((.((..(((((.((((((..(((((((((....))))))))).)))))).)))))..))))))))((.....))((((((((.......)))))))). ( -38.10)
>danRer1.chr5/21624765-21624864
CAAGAGUUCAAAGUUUGCAAGAUUCACUCGGAAUGGCUCCUUUGUAACCUUGUAAACCCUGACCUCAGUCAUCAAGAUACUUCACAAACAUCUAUUUU
...(((.(((..(((((((((.((.((..(((.....)))...)))).)))))))))..))).))).(((.....))).................... ( -19.30)
>consensus
GCUGGUA_U_UAGGUCAAAGUAAACAGAUUAUACAAGA____AUAAUAUUUCUUGAUCCCCUGUAAACCUUGACCUAUGUUCAUUUAAAACAGUAAACUU_____AAAAAAAUCUGCCUA
.............(((((.((..((((......(((((............))))).....))))..)).))))).............................................. ( -7.19 =  -7.42 +   0.23) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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