Structure #144749
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | - |
| Position | 32,415,259 - 32,415,374 |
| Number of sequences | 6 |
| Organisms | human, mouse, rat, dog, chicken, fugu, zebrafish |
| Mean pairwise identity | 62.05 |
| Columns | 120 |
| Mean single MFE | -32.18 |
| Consensus MFE | -14.79 |
| Combinations/base pair | 26 / 19 = 1.37 |
| SCI | 0.46 |
| z-score | -3.49 |
| RNA class probability | 0.994545 |
This structure is part of cluster 80020
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 6 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 62.05 Mean single sequence MFE: -32.18 Consensus MFE: -14.79 Energy contribution: -15.18 Covariance contribution: 0.39 Mean z-score: -3.49 Structure conservation index: 0.46 SVM decision value: 2.49 SVM RNA-class probability: 0.994545 Prediction: RNA ###################################################################### >hg17.chr5/32415374-32415259 UAGGCAGACUUUUUUUUUUUAAGUUUACUGUUUUAAAUGAACACAGGUCAAGGUUCACAGGGGAUCAAGAAAUAUUAUUCUUGUAUAAUCUGUUUACUUUGACCUAAAUACCAGC ..((.((((((.........))))))..(((((.....))))).((((((((((..(((((..((((((((......)))))).))..)))))..)))))))))).....))... ( -31.80) >mm5.chr15/92056188-92056298 UAGGCAGAUUUUUUUCAGUUUACUGUUUUGUAUGAACAUAGGUCAAGGUUCACAGGGGAUCAAGAAAUAUUAUUCUUGUAUAAUCUGUUUACUUUGACCUAAAUACUAGC ((((((((.......(((....))).))))).......(((((((((((..(((((..((((((((......)))))).))..)))))..)))))))))))....))).. ( -32.20) >canFam1.chr4/13050646-13050761 UAGGCAGAUUUUUUUUUUUAAGUUUACUGUUUUAAAUGAACAUAGGUCAAGGUUCACAGGGGAUCAAGAAAUAUUAUUCUUGUAUAAUCUGUUUACUUUGACCUAAAAUACCAGC ..((.((((((........))))))..(((((.....)))))(((((((((((..(((((..((((((((......)))))).))..)))))..))))))))))).....))... ( -31.80) >galGal2.chrZ_random/9014144-9014040 UAGAAAGAUACUGUAUUUAUUGUUACAAGUGAACAUGGGUCAAAGUGUACAGGGGAUCAAGAAAUGUUAUUCUUGUAUAACCUGGGCACUUUGACUUCUACCAC (((((.....((((.((((((......)))))).))))(((((((((..((((..((((((((......)))))).))..))))..)))))))))))))).... ( -36.40) >fr1.chrUn/60595645-60595540 UAAGUACCCGUCUGUGAGAUACCUGGACCAACCCGGGGUCAGGGUUUAGAAGAUGGCAAGAAAGCUUCUGCUUCCUUGUGCAUCUUGCAAACUUUGAACUCCCGU .............(.(((...(((((......))))).(((((((((..(((((((((((.((((....)))).))))).))))))..))))))))).))).).. ( -36.40) >danRer1.chr5/21624864-21624765 AAAAUAGAUGUUUGUGAAGUAUCUUGAUGACUGAGGUCAGGGUUUACAAGGUUACAAAGGAGCCAUUCCGAGUGAAUCUUGCAAACUUUGAACUCUUG .....(((((.........)))))........(((.(((((((((.(((((((.((..((((...))))...))))))))).))))))))).)))... ( -24.50) >consensus UAGGCAGAUUUUUUU_____AAGUUUACUGUUUUAAAUGAACAUAGGUCAAGGUUCACAGGGGAUCAAGAAAUAUUAU____UCUUGUAUAACCUGUUUACUUUGACCUA_A_UACCAGC ............................................((((((((((...((((....(((((............))))).....))))...))))))))))........... (-14.79 = -15.18 + 0.39)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
