Structure #144758

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	32,415,374 - 32,415,487
Number of sequences	6
Organisms	human, mouse, rat, dog, chicken, fugu, zebrafish
Mean pairwise identity	65.12
Columns	120
Mean single MFE	-26.97
Consensus MFE	-10.4
Combinations/base pair	24 / 17 = 1.41
SCI	0.39
z-score	-1.8
RNA class probability	0.781141

This structure is part of cluster 80020

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 6
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  65.12
 Mean single sequence MFE: -26.97
 Consensus MFE: -10.40
 Energy contribution: -11.77
 Covariance contribution:   1.37
 Mean z-score:  -1.80
 Structure conservation index:   0.39
 SVM decision value:   0.56
 SVM RNA-class probability: 0.781141
 Prediction: RNA

######################################################################

>hg17.chr5/32415374-32415487
CAUUAGAAAUAAAAGAAAAAGUAAAGAGCUAAAAAGUUUGUCUAGGGACUGAAAGGUUAAGGAAAUCUGUUUGGUUUCCCUUCUGUGCCUUUGCAUGACUGCAAAGUCACUAA
..((((..............((((((.((....(((..........((((....))))..(((((((.....))))))))))....)))))))).(((((....))))))))) ( -26.40)
>mm5.chr15/92056410-92056298
CAUUAGAAAUAAAAUGGAAAAGUAAAGAGCUAAAGUUUGUCUAGGGACUGAAAGGUUAAGGAAAUCUGUUUGGUUUCCUCUCCGUGCCUUUGCAUGUCUGCAAAGUCACUAA
...((((....((((.....(((.....)))...)))).))))((((((....)))).((((((((.....))))))))..))(((.(((((((....))))))).)))... ( -28.70)
>rn3.chr2/196661789-196661675
AAUUAGAAAUAAAAAGGAAAAGUAAAGAGCUAAAAAGUUUGUCUAGGGACUGAAAGGUUAAGGAAAUCUGUUUGGUUUCCUCUCUGUGCCUUUGCAUGUCUGCAAAGUCACUAA
..(((....))).............((((..................((((....)))).((((((((.....))))))))))))(((.(((((((....))))))).)))... ( -26.80)
>galGal2.chrZ_random/9014144-9014259
UAUUAGAAAUAAAAAGGAUAAAGUAAAGGUCUAAGAAGUAGGUAUAGAGACUGAAAGGUCAAGGGAAUCUGUUUGGUUUCUUUAUUGUGCCUUUGCCAGAAUGCAAAGUCACUAA
..(((....)))..(((((.....................(((((((.((((....))))(((((((((.....))))))))).)))))))(((((......)))))))).)).. ( -25.30)
>fr1.chrUn/60595645-60595740
AAGUACACCUGAGAGGAGAGCAUAGGGACUGAAAGAGCCAAGGAAGUCUGCUUCAUUCUGCUGCACUUCUGCUCAGGAAGCAGAACCACAGGAGA
.......(((((((((((.((((((((.((.....))))...((((....))))...))).))).))))).)))))).................. ( -27.30)
>danRer1.chr5/21624864-21624973
CAUUUUACAAAAGAUCAGUUUGCAAGAGUAGUUGCAUAGGAACUGAAGCAGUCAAGGAAAUCUGCUUUACUUUGCCUGUGUGUAUGCAGAGCAAGCAACACCACAGUAA
.................((((((....(((...(((((((...((((((((..........)))))))).....)))))))...)))...))))))............. ( -27.30)
>consensus
CAUUAGAAAUAAAA__GAAAAAGUAAAGAGCUAAAAAGUUUGUAUAGGGACUGAAAG_GUCAAGGAAAUCUGUUUGGUUUCCUUUCUGUGCCUUUGCAU_GAAUGCAAAGUCAC___UAA
...............................................................(((((((.....))))))).....(((.(((((((.....))))))).)))...... (-10.40 = -11.77 +   1.37) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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