Structure #144760

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	32,415,374 - 32,415,487
Number of sequences	6
Organisms	human, mouse, rat, dog, chicken, fugu, zebrafish
Mean pairwise identity	65.12
Columns	120
Mean single MFE	-23
Consensus MFE	-10.75
Combinations/base pair	15 / 10 = 1.50
SCI	0.47
z-score	-1.89
RNA class probability	0.937786

This structure is part of cluster 80020

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 6
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  65.12
 Mean single sequence MFE: -23.00
 Consensus MFE: -10.75
 Energy contribution: -10.70
 Covariance contribution:  -0.05
 Mean z-score:  -1.89
 Structure conservation index:   0.47
 SVM decision value:   1.26
 SVM RNA-class probability: 0.937786
 Prediction: RNA

######################################################################

>hg17.chr5/32415487-32415374
UUAGUGACUUUGCAGUCAUGCAAAGGCACAGAAGGGAAACCAAACAGAUUUCCUUAACCUUUCAGUCCCUAGACAAACUUUUUAGCUCUUUACUUUUUCUUUUAUUUCUAAUG
...(((.(((((((....))))))).)))((((((....)).......................(((....)))...............................)))).... ( -21.50)
>mm5.chr15/92056298-92056410
UUAGUGACUUUGCAGACAUGCAAAGGCACGGAGAGGAAACCAAACAGAUUUCCUUAACCUUUCAGUCCCUAGACAAACUUUAGCUCUUUACUUUUCCAUUUUAUUUCUAAUG
...(((.(((((((....))))))).)))((((((((((.(.....).))))))).........(((....)))....................)))............... ( -24.50)
>rn3.chr2/196661675-196661789
UUAGUGACUUUGCAGACAUGCAAAGGCACAGAGAGGAAACCAAACAGAUUUCCUUAACCUUUCAGUCCCUAGACAAACUUUUUAGCUCUUUACUUUUCCUUUUUAUUUCUAAUU
...(((.(((((((....))))))).)))((((((((((.......((.............)).(((....)))....................)))))))))).......... ( -22.82)
>galGal2.chrZ_random/9014259-9014144
UUAGUGACUUUGCAUUCUGGCAAAGGCACAAUAAAGAAACCAAACAGAUUCCCUUGACCUUUCAGUCUCUAUACCUACUUCUUAGACCUUUACUUUAUCCUUUUUAUUUCUAAUA
...(((.((((((......)))))).))).((((((...................(((......)))((((...........))))......))))))................. ( -16.20)
>fr1.chrUn/60595740-60595645
UCUCCUGUGGUUCUGCUUCCUGAGCAGAAGUGCAGCAGAAUGAAGCAGACUUCCUUGGCUCUUUCAGUCCCUAUGCUCUCCUCUCAGGUGUACUU
(((.(((((.((((((((...)))))))).))))).))).(((((.((.((.....)))).))))).......(((...((.....)).)))... ( -24.40)
>danRer1.chr5/21624973-21624864
UUACUGUGGUGUUGCUUGCUCUGCAUACACACAGGCAAAGUAAAGCAGAUUUCCUUGACUGCUUCAGUUCCUAUGCAACUACUCUUGCAAACUGAUCUUUUGUAAAAUG
...(((((((((.((.......)))))).)))))((((((...(((((.((.....)))))))((((((....(((((......)))))))))))..))))))...... ( -28.60)
>consensus
UUA___GUGACUUUGCAGAC_AUGCAAAGGCACAGAAAGGAAACCAAACAGAUUUCCUUAAC_CUUUCAGUCCCUAGACAAACUUUUUAGCUCUUUACUUUUCC__UUUUAUUUCUAAUG
......(((.(((((((.....))))))).)))....................................................................................... (-10.75 = -10.70 +  -0.05) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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