Structure #144846

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	35,585,000 - 35,585,063
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	73.71
Columns	66
Mean single MFE	-12.75
Consensus MFE	-9.12
Combinations/base pair	12 / 11 = 1.09
SCI	0.72
z-score	-1.74
RNA class probability	0.944014

This structure is part of cluster 80088

Alignment

[Download Clustal]

RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 66
 Columns: 66
 Strand: +
 Mean pairwise identity:  73.71
 Mean single sequence MFE: -12.75
 Consensus MFE:  -9.12
 Energy contribution:  -9.88
 Covariance contribution:   0.75
 Mean z-score:  -1.74
 Structure conservation index:   0.72
 SVM decision value:   1.32
 SVM RNA-class probability: 0.944014
 Prediction: RNA

######################################################################

>hg17.chr5/35585000-35585063
CUAGGAAAUACUGCGAGACUUAAAAAUCAGCCUUGUCCUGAAACCAGAAGGUCAGGACAAAAC
.(((......)))...................(((((((((..((....)))))))))))... ( -14.00)
>mm5.chr15/94435387-94435331
CUAGGAAAUUGUGCUGUGAGAAAUCUUGCCAUGAAGCCAAGAGGUCACAACAAUAC
.......(((((..(((((....(((((.(.....).)))))..)))))))))).. ( -11.50)
>rn3.chr2/201464232-201464173
CUAGGAAAUUGUACUGAGACUUAAAAUCUUGUCAUGAAGCCAAAAGGUCACGACAAAAC
............................(((((.((..(((....))))).)))))... (  -7.40)
>canFam1.chr4/15263467-15263404
CUAGGAAAUGCUGUGAGAUUUAACAACCAGUUUUGUCCUGAAACCAUAAGGUCAGGACAAAAC
...........(((........)))....((((((((((((..((....)))))))))))))) ( -18.10)
>consensus
CUAGGAAA___UACUGUGAGACUUAA_____AAUCUUGUCAUGAAACCAAAAGGUCACGACAAAAC
...................................((((((((..(((....)))))))))))... ( -9.12 =  -9.88 +   0.75) 

	

[Download RNAz result]

Consensus structure

Secondary structure graph

[PS | PDF]

Montain plot

[PS | PDF]

Dotplot

[PS | PDF]