Structure #146349
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | + |
| Position | 64,358,399 - 64,358,517 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 83.87 |
| Columns | 120 |
| Mean single MFE | -26.48 |
| Consensus MFE | -21.01 |
| Combinations/base pair | 30 / 25 = 1.20 |
| SCI | 0.79 |
| z-score | -2.84 |
| RNA class probability | 0.992673 |
This structure is part of cluster 80965
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 83.87 Mean single sequence MFE: -26.48 Consensus MFE: -21.01 Energy contribution: -20.07 Covariance contribution: -0.94 Mean z-score: -2.84 Structure conservation index: 0.79 SVM decision value: 2.34 SVM RNA-class probability: 0.992673 Prediction: RNA ###################################################################### >hg17.chr5/64358399-64358517 UACAUGAUGCCAAAACAUCUGGUCAAUUCAGUUUAAAAAAAAAAAAAAACUUUCAUCAAUGCAGUGAAUUUCUUCAGUCAAUCCAGAUGUUUGGCAUCUUGUAGACAAAACAUCCAGA ((((.(((((((((.(((((((.......(((((............)))))........((.(.((((....)))).)))..)))))))))))))))).))))............... ( -30.20) >mm5.chr13/15073930-15073811 UAUGUAAUGCCAAAACAUCUGGUCAAUUCCAUUUUUUUUUUAAAAGCCAACCUCCAUCAAUGUAGUGACUUUCUUCAGUCAAUCCAGAUGUUUGGCGGCUUGUAGACAAAACAUCCAGA ........((((((.(((((((.........(((((.....)))))...................(((((......)))))..)))))))))))))((..(((.......))).))... ( -24.80) >rn3.chr2/222742307-222742188 UGUGCAAUGCCAAAACAUCUGGUCAAUCCCACUUUUUUUUUAAAAGCCAACCUCCAUCGAUGUAGUGAAUUUCUUCAGUCAAUCCAGAUGUUUGGCGGCUCGUAGACAAAACACCCAGA .(.((...((((((.(((((((.........(((((.....)))))..............((.(.((((....)))).)))..))))))))))))).)).).................. ( -24.70) >canFam1.chr2/51472735-51472845 UGCAUAAUGCCAAAACAUCUGGUCAAUUCAGUUUAAAAAAAAAUAUAUCGAUAUAGUGAAUUUCUUCAGUCAAUCCAGAUGUUUGGCAUCUUGUAGACAAAACAUCCAGA ((((..((((((((.(((((((........((((......)))).....(((....((((....)))))))...)))))))))))))))..))))............... ( -26.20) >consensus UACAUAAUGCCAAAACAUCUGGUCAAUU_CAGUUUUUUUUUAAAAAAAAACCUCCAUCAAUGUAGUGAAUUUCUUCAGUCAAUCCAGAUGUUU_GGCAGCUUGUAGACAAAACAUCCAGA ((((...((((.((((((((((..........(((......))).....................((((....))))......)))))))))).))))...))))............... (-21.01 = -20.07 + -0.94)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
