Structure #146351

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	64,358,399 - 64,358,517
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	83.87
Columns	120
Mean single MFE	-32.67
Consensus MFE	-23.74
Combinations/base pair	41 / 33 = 1.24
SCI	0.73
z-score	-2.93
RNA class probability	0.98959

This structure is part of cluster 80965

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.87
 Mean single sequence MFE: -32.67
 Consensus MFE: -23.74
 Energy contribution: -23.43
 Covariance contribution:  -0.31
 Mean z-score:  -2.93
 Structure conservation index:   0.73
 SVM decision value:   2.17
 SVM RNA-class probability: 0.989590
 Prediction: RNA

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>hg17.chr5/64358517-64358399
UCUGGAUGUUUUGUCUACAAGAUGCCAAACAUCUGGAUUGACUGAAGAAAUUCACUGCAUUGAUGAAAGUUUUUUUUUUUUUUUAAACUGAAUUGACCAGAUGUUUUGGCAUCAUGUA
...((((.....))))(((.((((((((((((((((..((..((((....))))...))(..((...(((((............)))))..))..)))))))).))))))))).))). ( -36.10)
>mm5.chr13/15073811-15073930
UCUGGAUGUUUUGUCUACAAGCCGCCAAACAUCUGGAUUGACUGAAGAAAGUCACUACAUUGAUGGAGGUUGGCUUUUAAAAAAAAAAUGGAAUUGACCAGAUGUUUUGGCAUUACAUA
..(((((.....)))))......(((((((((((((..(((((......)))))...((((..((((((....)))))).......)))).......))))))).))))))........ ( -31.00)
>rn3.chr2/222742188-222742307
UCUGGGUGUUUUGUCUACGAGCCGCCAAACAUCUGGAUUGACUGAAGAAAUUCACUACAUCGAUGGAGGUUGGCUUUUAAAAAAAAAGUGGGAUUGACCAGAUGUUUUGGCAUUGCACA
.....((((((((....))))..((((((((((((((((((.((((....)))).....))))).....((.((((((.....)))))).)).....))))))).))))))...)))). ( -32.50)
>canFam1.chr2/51472845-51472735
UCUGGAUGUUUUGUCUACAAGAUGCCAAACAUCUGGAUUGACUGAAGAAAUUCACUAUAUCGAUAUAUUUUUUUUUAAACUGAAUUGACCAGAUGUUUUGGCAUUAUGCA
..(((((.....)))))((.((((((((((((((((......((((....)))).....(((((.((.(((.....))).)).)))))))))))).))))))))).)).. ( -31.10)
>consensus
UCUGGAUGUUUUGUCUACAAGACGCC_AAACAUCUGGAUUGACUGAAGAAAUUCACUACAUCGAUGGAGGUUGGCUUUUAAAAAAAAACUG_AAUUGACCAGAUGUUUUGGCAUUACACA
.......((((((....))))))(((.(((((((((((((((.((.((.......)).)))))))(((((....)))))...................)))))))))).)))........ (-23.74 = -23.43 +  -0.31)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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