Structure #146357
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | - |
| Position | 64,358,438 - 64,358,556 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 89.69 |
| Columns | 120 |
| Mean single MFE | -33.6 |
| Consensus MFE | -27.05 |
| Combinations/base pair | 40 / 37 = 1.08 |
| SCI | 0.81 |
| z-score | -3.4 |
| RNA class probability | 0.983073 |
This structure is part of cluster 80965
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 89.69 Mean single sequence MFE: -33.60 Consensus MFE: -27.05 Energy contribution: -28.18 Covariance contribution: 1.13 Mean z-score: -3.40 Structure conservation index: 0.81 SVM decision value: 1.93 SVM RNA-class probability: 0.983073 Prediction: RNA ###################################################################### >hg17.chr5/64358556-64358438 GGUUAAUCCAGUCAAUUCUGUCAAAUCUUCAGUUAAUCAUCUGGAUGUUUUGUCUACAAGAUGCCAAACAUCUGGAUUGACUGAAGAAAUUCACUGCAUUGAUGAAAGUUUUUUUUUU .((((((.((((.((((........(((((((((((((....((((((((((((.....))))..)))))))).))))))))))))))))).)))).))))))............... ( -32.60) >mm5.chr13/15073851-15073969 GGCUAAUCCAGUCAACUCUGUCAAAUCUUCAGUUAAUCAUCUGGAUGUUUUGUCUACAAGCCGCCAAACAUCUGGAUUGACUGAAGAAAGUCACUACAUUGAUGGAGGUUGGCUUUUA .........(((((((((((((((.(((((((((((((....((((((((.((.........)).)))))))).)))))))))))))..((....)).)))))))).))))))).... ( -40.40) >rn3.chr2/222742228-222742346 GGCUAAUCCAGUCAACUCCGUCAAAUCUUCACUUAAUCAUCUGGGUGUUUUGUCUACGAGCCGCCAAACAUCUGGAUUGACUGAAGAAAUUCACUACAUCGAUGGAGGUUGGCUUUUA .........(((((((((((((..............(((((..(((((((.((.........)).)))))))..)).))).((((....)))).......)))))).))))))).... ( -33.60) >canFam1.chr2/51472884-51472768 GGUUAAUCCAGUCAACUCUGUCAAAUCUUCAGUUAAUCAUCUGGAUGUUUUGUCUACAAGAUGCCAAACAUCUGGAUUGACUGAAGAAAUUCACUAUAUCGAUAUAUUUUUUUUU .....((((((......))).....(((((((((((((....((((((((((((.....))))..)))))))).))))))))))))).............)))............ ( -27.80) >consensus GGCUAAU_CCAGUCAACUCUGUCAAAUCUUCAGUUAAUCAUCUGGAUGUUUUGUCUACAAGACGCC_AAACAUCUGGAUUGACUGAAGAAAUUCACUACAUCGAUGGAGGUUGGCUUUUA (((((((....(((((....((....(((((((((((((....((((((((.(.(........).).)))))))).))))))))))))).....))....)))))....))))))).... (-27.05 = -28.18 + 1.13)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
