Structure #146364

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	64,358,517 - 64,358,635
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	88.01
Columns	120
Mean single MFE	-23.03
Consensus MFE	-16.14
Combinations/base pair	22 / 18 = 1.22
SCI	0.7
z-score	-2.15
RNA class probability	0.786091

This structure is part of cluster 80965

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  88.01
 Mean single sequence MFE: -23.03
 Consensus MFE: -16.14
 Energy contribution: -15.08
 Covariance contribution:  -1.06
 Mean z-score:  -2.15
 Structure conservation index:   0.70
 SVM decision value:   0.57
 SVM RNA-class probability: 0.786091
 Prediction: RNA

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>hg17.chr5/64358635-64358517
UUCUAUCUCCUCUACAGCUGGACUCUGCUUCAGCCAAGCAAACGGCCUGACACUAUGUCUAUACAAUGCUAUAACAUCUGGUUAAUCCAGUCAAUUCUGUCAAAUCUUCAGUUAAUCA
...............(((((((...(((((.....)))))...((..(((((..((((.((((......))))))))((((.....)))).......)))))..)))))))))..... ( -19.30)
>mm5.chr13/15073930-15074047
AUCCAUCUCCUUUUACAGCUGGACCCCACUCCAGCCAAGUAAACGUCCUGACAGUGUCUAUACAAUGCUGCAACAUCUGGCUAAUCCAGUCAACUCUGUCAAAUCUUCAGUUAAUCA
...........(((((.((((((......))))))...))))).....((((((.((.......(((......))).(((((.....))))))).))))))................ ( -22.10)
>rn3.chr2/222742307-222742423
AUCCGUCUCCUUAGCAGCUGGACCCCACUCCAGCCAAGGAAACGUCCUGACAGCGUCUAUACAAUGCUGCAACAUCUGGCUAAUCCAGUCAACUCCGUCAAAUCUUCACUUAAUCA
...(((.(((((....((((((......)))))).))))).)))...(((((((((.......)))))........(((((.....))))).....))))................ ( -27.50)
>canFam1.chr2/51472962-51472845
AUUAUCUCCUUUACAGCUGGACUCCACUCCAGCCAAGCAAACGUCCUGACACCAUGUCUAUACGAUGCUGUAACAUCUGGUUAAUCCAGUCAACUCUGUCAAAUCUUCAGUUAAUCA
..........((((.((((((......))))))..((((..(((...(((.....)))...))).))))))))...((((.....))))............................ ( -23.20)
>consensus
AUCCAUCUCCUUU_ACAGCUGGACCCCACUCCAGCCAAGCAAACGUCCUGACA__AUGUCUAUACAAUGCUGCAACAUCUGGCUAAU_CCAGUCAACUCUGUCAAAUCUUCAGUUAAUCA
.................((((((......)))))).............((((...(((.(........).))).....((((......))))........))))................ (-16.14 = -15.08 +  -1.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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