Structure #146366

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	64,358,556 - 64,358,674
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	82.44
Columns	120
Mean single MFE	-26.43
Consensus MFE	-19.36
Combinations/base pair	24 / 20 = 1.20
SCI	0.73
z-score	-2.07
RNA class probability	0.90469

This structure is part of cluster 80965

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.44
 Mean single sequence MFE: -26.43
 Consensus MFE: -19.36
 Energy contribution: -18.80
 Covariance contribution:  -0.56
 Mean z-score:  -2.07
 Structure conservation index:   0.73
 SVM decision value:   1.04
 SVM RNA-class probability: 0.904690
 Prediction: RNA

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>hg17.chr5/64358674-64358556
CAGGUCCUCUCCUCCAAAUCCCGCCUCUCUGCUUGGGCCUUCUAUCUCCUCUACAGCUGGACUCUGCUUCAGCCAAGCAAACGGCCUGACACUAUGUCUAUACAAUGCUAUAACAUCU
((((((................((((........)))).................((((((......)))))).........)))))).....((((.((((......)))))))).. ( -20.40)
>mm5.chr13/15073969-15074085
CAGGUCUUCUGCUCCAAAGCUCCCGCACUGCCCAGACCAUCCAUCUCCUUUUACAGCUGGACCCCACUCCAGCCAAGUAAACGUCCUGACAGUGUCUAUACAAUGCUGCAACAUCU
((((.(.((((...((..((....))..))..)))).............(((((.((((((......))))))...))))).).)))).((((((.......))))))........ ( -24.00)
>rn3.chr2/222742346-222742462
CAGGUCUUCUGCUCGAAAGCUCCCCUCACUGCCCAGACCAUCCGUCUCCUUAGCAGCUGGACCCCACUCCAGCCAAGGAAACGUCCUGACAGCGUCUAUACAAUGCUGCAACAUCU
..(((((...((..((.........))...))..)))))...(((.(((((....((((((......)))))).))))).)))...((.((((((.......))))))))...... ( -30.60)
>canFam1.chr2/51473002-51472884
CAGGUCCUCUGCUCCUAAGCCCCCUCUCAUUGCCGGGGCCAUUAUCUCCUUUACAGCUGGACUCCACUCCAGCCAAGCAAACGUCCUGACACCAUGUCUAUACGAUGCUGUAACAUCU
((((.(...((((.....(((((..(.....)..)))))................((((((......))))))..))))...).))))...............((((......)))). ( -30.70)
>consensus
CAGGUCCUCUGCUCCAAAGCCCCC_CUCACUGCCCAGACCAUCCAUCUCCUUU_ACAGCUGGACCCCACUCCAGCCAAGCAAACGUCCUGACA__AUGUCUAUACAAUGCUGCAACAUCU
..(((((...((...................))..))))).................((((((......))))))..((((........(((.....))).......))))......... (-19.36 = -18.80 +  -0.56)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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