Structure #147067
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | - |
| Position | 76,412,013 - 76,412,151 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 78.78 |
| Columns | 142 |
| Mean single MFE | -58.61 |
| Consensus MFE | -39.96 |
| Combinations/base pair | 57 / 44 = 1.30 |
| SCI | 0.68 |
| z-score | -2.19 |
| RNA class probability | 0.964369 |
This structure is part of cluster 81398
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 142 Columns: 142 Strand: + Mean pairwise identity: 78.78 Mean single sequence MFE: -58.61 Consensus MFE: -39.96 Energy contribution: -42.40 Covariance contribution: 2.44 Mean z-score: -2.19 Structure conservation index: 0.68 SVM decision value: 1.55 SVM RNA-class probability: 0.964369 Prediction: RNA ###################################################################### >hg17.chr5/76412151-76412013 GGAGGACUGAGAAGGUGAGGCAGUUUUGCCCCGUGCUGCCUUCCACCGGUUAAGACCUCCAAAAUCGAAGGGCUGCCCAGGCAGAGGAUGUCCCCUUGCCACCCUUGGAGGGGCAGCGCUGUGCUGGCCGACAUUUGU (((((.((.((..(((((((((((..........)))))))..))))..)).)).)))))....(((....(((((((.(((((.((.....)).))))).((...))..)))))))(((.....))))))....... ( -55.90) >mm5.chr13/24401098-24401235 GGAGGACUGAGAAGGUGGAGCAGUUCUGUACCGUGCUGCCUUCCAUUGGUUAAGACCUCCAACAGUAAAGGGCUGGCCGGCCAAAGAAUGUCCUCUCUAUCACCGUGGAGGGGCAGCACUGAGCUGGCCCACAUUGU (((((.((.((..(((((((((((.(......).)))))..))))))..)).)).))))).(((((...((((..(((((........(((((.((((((....)))))))))))...))).))..))))..))))) ( -55.30) >rn3.chr2/232603893-232604030 GGAGGACAGAGAAGGUGGAGCAGUUCAUACCGUGCUGCCUUCCAUUGGUUAAGACCUCCAACAGUAAAGGGCUAGCCAGGCAAAGAACAUCCUCUCCAGCGCCCUGGAGGGGGCAGUACUGUGCUGGCCCACAUUGU (((((.(..((..(((((((((((.(.....).)))))..))))))..))..).))))).(((((...(((((((((((..........((((((((((....)))))))))).....))).))))))))..))))) ( -58.26) >canFam1.chr3/62620709-62620850 GGAGGACUGAGAAGGUGAGGCAGCCCAGUGCUGUGCUGUCUUCCACCGGUUAAGACCUCCGAGAGUGAAGGCCUGCCAAGGCGGAGGAUGUCCCUCUGCCACCCUUGGAGGGGCAGUGCUGUGCUGGCCAACAUUUACGGU (((((.((.((..(((((((((((.((....)).)))))))..))))..)).)).)))))(.(((((..((((.((((.((((((((.....)))))))).((((....))))......)).)).))))..))))).)... ( -65.00) >consensus GGAGGACUGAGAAGGUGAAGCAGUUCUGUACCGUGCUGCCUUCCACCGGUUAAGACCUCCAACAGUAAAGGGCUGCCCAGGCAAAGAAUGUCCCCUCGACACCCUUGGAGGGG_CAGCACUGUGCUGGCCCACAUU____GU (((((.((.((..(((((((((((.(......).)))))..))))))..)).)).))))).........((((((((...((((....((.(((((((((....))))))))).))...))))))))))))........... (-39.96 = -42.40 + 2.44)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
