Structure #147400

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	81,363,110 - 81,363,225
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	87.45
Columns	120
Mean single MFE	-34.38
Consensus MFE	-25.2
Combinations/base pair	38 / 33 = 1.15
SCI	0.73
z-score	-2.82
RNA class probability	0.95546

This structure is part of cluster 81590

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  87.45
 Mean single sequence MFE: -34.38
 Consensus MFE: -25.20
 Energy contribution: -26.45
 Covariance contribution:   1.25
 Mean z-score:  -2.82
 Structure conservation index:   0.73
 SVM decision value:   1.44
 SVM RNA-class probability: 0.955460
 Prediction: RNA

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>hg17.chr5/81363110-81363225
CACUCCUGGUUGCCCUGGCAACGGGGCUCCCUUGCAUGCUAAUGACAUUAUAAUGUGAAAAAACACAUGCAAAUGCAGUAAAUAGUAAUUAGAGUCAGAGGCAUACAUGGAGUAG
.(((((.((..((((((....))))))..)).((.(((((..((((......(((((......)))))((....)).................))))..))))).)).))))).. ( -41.80)
>mm5.chr13/28607145-28607025
CAUUCCUGGUUGCCCUGGCAACGGGGCUCCUUCGAAUGCUAAUGACAUUAUAAUGAGAAAAAAGCCCACAUAUGCAAAUGCAGUAAAUAGUAAUUAGAGGCAGAGCCAUACGUGGAAUGG
(((((((((((((((((....)))))).((((..(.(((((...((......(((.(.........).))).(((....)))))...))))).)..))))...))))).....)))))). ( -35.90)
>rn3.chr2/236975492-236975377
CAAUCCUGGUUGCCCUGGCAACGGGGCUCCUUCGAAUGCUAAUGACAUUAUAAUGAGAAAAAAAACCACAUAUGCAAACGCAGUAAAUAGUAAUUAGAGGCAGAGCCAUACAUGG
......(((((((((((....)))))).((((..(.(((((...((......(((.(.........).))).(((....)))))...))))).)..))))...)))))....... ( -29.20)
>canFam1.chr3/66857861-66857744
UACUCCUGGUUGCCCUGGCAACCGGGCUCCCUUGCAUGCUAAUGACAUUAUAAUGAGAAAAAAACCACAUGCAAAUGCAAUAAAUAGUAAUUAGAGGCAGAGCCAUACAUGAAGUGG
((((.((((((((....)))))))(((((((((...(((((....(((....)))..............(((....))).....)))))....))))..)))))......).)))). ( -30.60)
>consensus
CACUCCUGGUUGCCCUGGCAACGGGGCUCCCUCGAAUGCUAAUGACAUUAUAAUGAGAAAAAAA___ACACAUGCAAAUGCAGUAAAUAGUAAUUAGAGGCAGAGCCAUACAUGGAGUGG
(((((((((((((....)))))..(((((((((...(((((....(((....))).................(((....))).....)))))....))))..)))))...)).)))))). (-25.20 = -26.45 +   1.25)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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