Structure #147487
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | - |
| Position | 82,395,781 - 82,395,911 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 86.39 |
| Columns | 132 |
| Mean single MFE | -45.33 |
| Consensus MFE | -42.24 |
| Combinations/base pair | 45 / 36 = 1.25 |
| SCI | 0.93 |
| z-score | -3.62 |
| RNA class probability | 0.998909 |
This structure is part of cluster 81645
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 132 Columns: 132 Strand: + Mean pairwise identity: 86.39 Mean single sequence MFE: -45.33 Consensus MFE: -42.24 Energy contribution: -41.55 Covariance contribution: -0.69 Mean z-score: -3.62 Structure conservation index: 0.93 SVM decision value: 3.28 SVM RNA-class probability: 0.998909 Prediction: RNA ###################################################################### >hg17.chr5/82395911-82395781 UGCAUGUGGAAAUGUCUGCUUCUCAUUCCUUGGGAGCAGGAAUAUGUUCAUAACAUGCUACAUUAACAAAGGAGUUCUCAGGGCUGCCAACCUUCUAGUAAAGGUUGAGUGGUAGUAUAUUUCUCCAACA .((((((.(((...((((((((.((.....))))))))))......)))...))))))............((((........((..((((((((......))))))).)..)).........)))).... ( -42.13) >mm5.chr13/29700615-29700745 UGCAUGUGGACAUGUCUGCCCUCCUUUCUUGGGGAGUAGGAGUGUAUCCAUAACAUGCUACAGUGAUCAAGGAGUUCUCAGGGCUGCCAGCCUUACAGGAAAGGUUGAGUAGUAGUAUAUUUCUCCUACA .((((((((((((..((((.((((......)))).))))..)))..)))...))))))...........(((((........((((((((((((......))))))).))))).........)))))... ( -45.13) >rn3.chr2/238133378-238133509 UGCAUGUGGACAUGUCUGCCCCUCUUCUCUUGGGGAGUAGGAAUGUAUCCAUAACAUGCUACAGUGAUGAAGGAGUUCUCAGGGCUACCAACCUUACAGUAGAGGUUGAGUAGUAGUAUAUUUCUCCUACA .((((((((((((..((((.((((.......)))).))))..)))..)))...))))))..((....)).(((((........((((((((((((......))))))).))))).........)))))... ( -45.43) >canFam1.chr3/67696461-67696592 UGCAUGUGGAAAAGUCUGCUCCUCAUUCUUUGGGGAGCAAGAAUACAUCCAUUACAUGCUACAUUAAAAAAGGAGUUCUCAGGGCUACCAGCCUUACAGUAGAGGUUGAGUAGUAGUAUAUUUCUCCUACA .(((((((((....(((((((((((.....)))))))).))).....)))...))))))...........(((((........((((((((((((......))))))).))))).........)))))... ( -48.63) >consensus UGCAUGUGGAAAUGUCUGCCCCUCAU_UCUU_GGGGAGCAGGAAUAUAUCCAUAACAUGCUACAGUAAUAAAGGAGUUCUCAGGGCUACCAACCUUACAGUAAAGGUUGAGUAGUAGUAUAUUUCUCCUACA .(((((((((....((((((((((........))))))))))......)))...))))))...........(((((........((((((((((((......))))))).))))).........)))))... (-42.24 = -41.55 + -0.69)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
