Structure #148152
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | + |
| Position | 89,198,008 - 89,198,128 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 89.67 |
| Columns | 120 |
| Mean single MFE | -26.52 |
| Consensus MFE | -19.72 |
| Combinations/base pair | 32 / 26 = 1.23 |
| SCI | 0.74 |
| z-score | -1.55 |
| RNA class probability | 0.512794 |
This structure is part of cluster 82009
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 89.67 Mean single sequence MFE: -26.52 Consensus MFE: -19.72 Energy contribution: -19.28 Covariance contribution: -0.44 Mean z-score: -1.55 Structure conservation index: 0.74 SVM decision value: -0.04 SVM RNA-class probability: 0.512794 Prediction: RNA ###################################################################### >hg17.chr5/89198008-89198128 AAUCCUAUUUAGAGCAAUGGUGAAAUCAAACAUGGUGUGCUCACUGGGAAGUUUGCAGCGUUUGACAAAUUGUAAUUCUGUUCUUUGCAAACUUCUAAACACUUCCUGCUAAGUGACAAC ...........(((((((.(((........))).)).)))))....((((((((((((.(...((((...........))))).))))))))))))...(((((......)))))..... ( -28.30) >mm5.chr13/37405347-37405227 AACACUAUUUAGAGCAACGGUGAAAUGAAACCUUGUGGGCUCACUGUGAAGUUUGCAGCAUUUGACAAAUUGUAAUUCUGUUCUUUGCAAACUUCUAAACACUUCCUGCUAAGUGACAAC ..((((......((((..((((...(((..((....))..)))....(((((((((((((....((.....)).....)))....))))))))))....))))...)))).))))..... ( -28.20) >rn3.chr2/247627586-247627466 GACACUAUUUAGAGCGACGGUGAAAUGAAACCUUGUGGGCUCACUGUGAAGUUUGCAACAUUUGACAAAUUGUAAUUCUGUUCUUUGCAAACUUCUAAACACUUCCUGCUAAGUGACAAC .....(((((((((.((.((((...(((..((....))..)))....(((((((((((.....((((...........))))..)))))))))))....)))))))).)))))))..... ( -28.50) >canFam1.chr3/73260126-73260006 AAUCCUAUUUAGAGCAACGGUGAAAUCAAACAUUGUGUGCUCACUGUGAAGUUUGCAACAUUUGACAAAUUGUAAUUCUGUUCUUCGCAAACUUCUAAACACUUCCUGCUAAGUGACAAC ...........(((((((((((........)))))).)))))..((((((((((((((((....((.....)).....))))....)))))))))....(((((......)))))))).. ( -28.70) >galGal2.chrW/1173297-1173417 AAUCCUAUUUAUAGCAACAGUGAAAUCAAGUAGUGUGCAAUUACUCUAAGGUUUGCAACAUUUGACAAAUUGUAAUUUUGUUCUUCACAAACUCCUAAACACUUCCUGCUAAGUGACAAC ...........(((((..((((...((((((.((.(((((..(((....))))))))))))))))...........(((((.....)))))........))))...)))))......... ( -18.90) >consensus AAUCCUAUUUAGAGCAACGGUGAAAUCAAACAUUGUGGGCUCACUGUGAAGUUUGCAACAUUUGACAAAUUGUAAUUCUGUUCUUUGCAAACUUCUAAACACUUCCUGCUAAGUGACAAC ............((((..((((............(((....)))...(((((((((((((....((.....)).....))))....)))))))))....))))...)))).......... (-19.72 = -19.28 + -0.44)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
