Structure #148155
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | + |
| Position | 89,198,048 - 89,198,168 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 95 |
| Columns | 120 |
| Mean single MFE | -23.86 |
| Consensus MFE | -21.46 |
| Combinations/base pair | 35 / 32 = 1.09 |
| SCI | 0.9 |
| z-score | -2.2 |
| RNA class probability | 0.998531 |
This structure is part of cluster 82009
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 95.00 Mean single sequence MFE: -23.86 Consensus MFE: -21.46 Energy contribution: -21.70 Covariance contribution: 0.24 Mean z-score: -2.20 Structure conservation index: 0.90 SVM decision value: 3.13 SVM RNA-class probability: 0.998531 Prediction: RNA ###################################################################### >hg17.chr5/89198048-89198168 UCACUGGGAAGUUUGCAGCGUUUGACAAAUUGUAAUUCUGUUCUUUGCAAACUUCUAAACACUUCCUGCUAAGUGACAACAAGCUUCAGCAAGUUUCCACAAACCUUCUGCAGCUUCUUC ......((((((((((((.(...((((...........))))).))))))))))))...(((((......))))).....(((((.(((...((((....))))...))).))))).... ( -26.50) >mm5.chr13/37405387-37405267 UCACUGUGAAGUUUGCAGCAUUUGACAAAUUGUAAUUCUGUUCUUUGCAAACUUCUAAACACUUCCUGCUAAGUGACAACAAGCUUCAGCAAGUUUCCACAAACCUUCUGCAGCUUCUUC ....((((((((((((((((....((.....)).....)))....))))))))))....(((((......))))))))..(((((.(((...((((....))))...))).))))).... ( -25.60) >rn3.chr2/247627626-247627506 UCACUGUGAAGUUUGCAACAUUUGACAAAUUGUAAUUCUGUUCUUUGCAAACUUCUAAACACUUCCUGCUAAGUGACAACAAGCUUCAGCAAGUUUCCACAAACCUUCUGCAGCUUCUUC ....((((((((((((((.....((((...........))))..)))))))))))....(((((......))))))))..(((((.(((...((((....))))...))).))))).... ( -25.70) >canFam1.chr3/73260166-73260046 UCACUGUGAAGUUUGCAACAUUUGACAAAUUGUAAUUCUGUUCUUCGCAAACUUCUAAACACUUCCUGCUAAGUGACAACAAGCUUCAGCAAGUUUCUACAAACCUUCUGCAGCUUCUUC ....((((((((((((((((....((.....)).....))))....)))))))))....(((((......))))))))..(((((.(((...((((....))))...))).))))).... ( -24.60) >galGal2.chrW/1173337-1173457 UUACUCUAAGGUUUGCAACAUUUGACAAAUUGUAAUUUUGUUCUUCACAAACUCCUAAACACUUCCUGCUAAGUGACAACAAGCAUCAGCAAGUUUCCACAAACCUUCUGCAGCUUCUUU .......((((((((........((((((.......))))))......(((((......(((((......))))).......((....)).)))))...))))))))............. ( -16.90) >consensus UCACUGUGAAGUUUGCAACAUUUGACAAAUUGUAAUUCUGUUCUUUGCAAACUUCUAAACACUUCCUGCUAAGUGACAACAAGCUUCAGCAAGUUUCCACAAACCUUCUGCAGCUUCUUC .......(((((((((((((....((.....)).....))))....)))))))))....(((((......))))).....(((((.(((...((((....))))...))).))))).... (-21.46 = -21.70 + 0.24)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
