Structure #148156
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | - |
| Position | 89,198,048 - 89,198,168 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 95 |
| Columns | 120 |
| Mean single MFE | -31.93 |
| Consensus MFE | -30.26 |
| Combinations/base pair | 42 / 37 = 1.14 |
| SCI | 0.95 |
| z-score | -2.19 |
| RNA class probability | 0.999634 |
This structure is part of cluster 82009
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 95.00 Mean single sequence MFE: -31.93 Consensus MFE: -30.26 Energy contribution: -30.18 Covariance contribution: -0.08 Mean z-score: -2.19 Structure conservation index: 0.95 SVM decision value: 3.81 SVM RNA-class probability: 0.999634 Prediction: RNA ###################################################################### >hg17.chr5/89198168-89198048 GAAGAAGCUGCAGAAGGUUUGUGGAAACUUGCUGAAGCUUGUUGUCACUUAGCAGGAAGUGUUUAGAAGUUUGCAAAGAACAGAAUUACAAUUUGUCAAACGCUGCAAACUUCCCAGUGA .((.(((((.(((.((((((....)))))).))).))))).)).(((((.....((((((...(((..(((((((((..............)))).))))).)))...)))))).))))) ( -31.84) >mm5.chr13/37405267-37405387 GAAGAAGCUGCAGAAGGUUUGUGGAAACUUGCUGAAGCUUGUUGUCACUUAGCAGGAAGUGUUUAGAAGUUUGCAAAGAACAGAAUUACAAUUUGUCAAAUGCUGCAAACUUCACAGUGA .((.(((((.(((.((((((....)))))).))).))))).)).(((((.((((.....))))..((((((((((.(..(((((.......)))))....)..))))))))))..))))) ( -31.70) >rn3.chr2/247627506-247627626 GAAGAAGCUGCAGAAGGUUUGUGGAAACUUGCUGAAGCUUGUUGUCACUUAGCAGGAAGUGUUUAGAAGUUUGCAAAGAACAGAAUUACAAUUUGUCAAAUGUUGCAAACUUCACAGUGA .((.(((((.(((.((((((....)))))).))).))))).)).(((((.((((.....))))..(((((((((((...(((((.......)))))......)))))))))))..))))) ( -33.80) >canFam1.chr3/73260046-73260166 GAAGAAGCUGCAGAAGGUUUGUAGAAACUUGCUGAAGCUUGUUGUCACUUAGCAGGAAGUGUUUAGAAGUUUGCGAAGAACAGAAUUACAAUUUGUCAAAUGUUGCAAACUUCACAGUGA .((.(((((.(((.((((((....)))))).))).))))).)).(((((.((((.....))))..(((((((((((...(((((.......)))))......)))))))))))..))))) ( -33.50) >galGal2.chrW/1173457-1173337 AAAGAAGCUGCAGAAGGUUUGUGGAAACUUGCUGAUGCUUGUUGUCACUUAGCAGGAAGUGUUUAGGAGUUUGUGAAGAACAAAAUUACAAUUUGUCAAAUGUUGCAAACCUUAGAGUAA ........(((..((((((((..(((((((...(((((((.((((......)))).)))))))...)))))).....((.((((.......)))))).....)..))))))))...))). ( -28.80) >consensus GAAGAAGCUGCAGAAGGUUUGUGGAAACUUGCUGAAGCUUGUUGUCACUUAGCAGGAAGUGUUUAGAAGUUUGCAAAGAACAGAAUUACAAUUUGUCAAAUGUUGCAAACUUCACAGUGA .((.(((((.(((.((((((....)))))).))).))))).))..(((((......)))))....(((((((((((...(((((.......)))))......)))))))))))....... (-30.26 = -30.18 + -0.08)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
