Structure #148159
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | + |
| Position | 89,198,128 - 89,198,248 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 92.36 |
| Columns | 120 |
| Mean single MFE | -28.91 |
| Consensus MFE | -23.81 |
| Combinations/base pair | 34 / 31 = 1.10 |
| SCI | 0.82 |
| z-score | -1.75 |
| RNA class probability | 0.726793 |
This structure is part of cluster 82009
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 92.36 Mean single sequence MFE: -28.91 Consensus MFE: -23.81 Energy contribution: -23.50 Covariance contribution: -0.31 Mean z-score: -1.75 Structure conservation index: 0.82 SVM decision value: 0.41 SVM RNA-class probability: 0.726793 Prediction: RNA ###################################################################### >hg17.chr5/89198128-89198248 AAGCUUCAGCAAGUUUCCACAAACCUUCUGCAGCUUCUUCAUCUCACUAUAAAGAACAGAUGCCUUUUAGGGGCUGCUGUGAGCUCUUCUGUUCUCUGUACAAUAUGUACACGUACAAAA (((((.(((...((((....))))...))).)))))...........((((.((((((((.((((.....)))).((.....))...)))))))).)))).....((((....))))... ( -27.50) >mm5.chr13/37405467-37405347 AAGCUUCAGCAAGUUUCCACAAACCUUCUGCAGCUUCUUCAUCUCACUAUAAAGAACAGAUGCCUCUGAGGGGCUGCUGUGAGCUCUUCUGUUCUCUGUACAAUAUGCACACGUACAGAA (((((.(((...((((....))))...))).))))).................(((((((.((((.....)))).((.....))...)))))))(((((((...........))))))). ( -31.30) >canFam1.chr3/73260246-73260126 AAGCUUCAGCAAGUUUCUACAAACCUUCUGCAGCUUCUUCAUCUCACUAUAAAGAACAGAUGCCGUUUAGGGGCUGCUGUGAGCUCUUCUGUUCUCUGUACAAUAUGUACACGUACAAAA .((((((((((.((..(((.......((((....(((((.((......)).))))))))).......)))..))))))).)))))....(((....(((((.....)))))...)))... ( -28.44) >galGal2.chrW/1173417-1173537 AAGCAUCAGCAAGUUUCCACAAACCUUCUGCAGCUUCUUUAUCUCAGUAUAAAGAACAGAUGCUGUUUUGGGGCUGCUGUGAGUUCUUCUGUUCUUUGUAUAAUAUGCACAUGUAUAUGA ((((..(((...((((....))))...)))..))))..........((((((((((((((.........((((((......)))))))))))))))))))).((((((....)))))).. ( -28.40) >consensus AAGCUUCAGCAAGUUUCCACAAACCUUCUGCAGCUUCUUCAUCUCACUAUAAAGAACAGAUGCCGUUUAGGGGCUGCUGUGAGCUCUUCUGUUCUCUGUACAAUAUGCACACGUACAAAA (((((.(((...((((....))))...))).)))))................((((((((.........((((((......)))))))))))))).(((((...........)))))... (-23.81 = -23.50 + -0.31)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
