Structure #148160

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	89,198,128 - 89,198,248
Number of sequences	4
Organisms	human, mouse, rat, dog, chicken
Mean pairwise identity	92.36
Columns	120
Mean single MFE	-32.63
Consensus MFE	-28.8
Combinations/base pair	42 / 38 = 1.11
SCI	0.88
z-score	-1.68
RNA class probability	0.803846

This structure is part of cluster 82009

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  92.36
 Mean single sequence MFE: -32.62
 Consensus MFE: -28.80
 Energy contribution: -29.30
 Covariance contribution:   0.50
 Mean z-score:  -1.68
 Structure conservation index:   0.88
 SVM decision value:   0.63
 SVM RNA-class probability: 0.803846
 Prediction: RNA

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>hg17.chr5/89198248-89198128
UUUUGUACGUGUACAUAUUGUACAGAGAACAGAAGAGCUCACAGCAGCCCCUAAAAGGCAUCUGUUCUUUAUAGUGAGAUGAAGAAGCUGCAGAAGGUUUGUGGAAACUUGCUGAAGCUU
.....(((..((((.....))))((((((((((...((.....)).(((.......))).))))))))))...)))........(((((.(((.((((((....)))))).))).))))) ( -34.50)
>mm5.chr13/37405347-37405467
UUCUGUACGUGUGCAUAUUGUACAGAGAACAGAAGAGCUCACAGCAGCCCCUCAGAGGCAUCUGUUCUUUAUAGUGAGAUGAAGAAGCUGCAGAAGGUUUGUGGAAACUUGCUGAAGCUU
((((((.(.(((((.....)))))..).))))))((((((...(((((....((((....))))((((((((......)))))))))))))....(((..((....))..)))).))))) ( -37.50)
>canFam1.chr3/73260126-73260246
UUUUGUACGUGUACAUAUUGUACAGAGAACAGAAGAGCUCACAGCAGCCCCUAAACGGCAUCUGUUCUUUAUAGUGAGAUGAAGAAGCUGCAGAAGGUUUGUAGAAACUUGCUGAAGCUU
.....(((..((((.....))))((((((((((...((.....)).(((.......))).))))))))))...)))........(((((.(((.((((((....)))))).))).))))) ( -34.40)
>galGal2.chrW/1173537-1173417
UCAUAUACAUGUGCAUAUUAUACAAAGAACAGAAGAACUCACAGCAGCCCCAAAACAGCAUCUGUUCUUUAUACUGAGAUAAAGAAGCUGCAGAAGGUUUGUGGAAACUUGCUGAUGCUU
............((((...............((.....)).((((((((......((((.(((..((((......))))...))).)))).....)))....(....).))))))))).. ( -24.10)
>consensus
UUUUGUACGUGUACAUAUUGUACAGAGAACAGAAGAGCUCACAGCAGCCCCUAAAAGGCAUCUGUUCUUUAUAGUGAGAUGAAGAAGCUGCAGAAGGUUUGUGGAAACUUGCUGAAGCUU
..(((((..(((((.....)))))(((((((((...((.....)).(((.......))).))))))))))))))..........(((((.(((.((((((....)))))).))).))))) (-28.80 = -29.30 +   0.50) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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