Structure #148162

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	89,198,168 - 89,198,286
Number of sequences	4
Organisms	human, mouse, rat, dog, chicken
Mean pairwise identity	88.94
Columns	120
Mean single MFE	-30.95
Consensus MFE	-21.7
Combinations/base pair	32 / 28 = 1.14
SCI	0.7
z-score	-1.54
RNA class probability	0.506748

This structure is part of cluster 82009

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  88.94
 Mean single sequence MFE: -30.95
 Consensus MFE: -21.70
 Energy contribution: -21.95
 Covariance contribution:   0.25
 Mean z-score:  -1.54
 Structure conservation index:   0.70
 SVM decision value:  -0.05
 SVM RNA-class probability: 0.506749
 Prediction: RNA

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>hg17.chr5/89198168-89198286
AUCUCACUAUAAAGAACAGAUGCCUUUUAGGGGCUGCUGUGAGCUCUUCUGUUCUCUGUACAAUAUGUACACGUACAAAAAGGAAUUCACAUUCGAUGAAAAUGUGAUAGUCAAGGCC
.......((((.((((((((.((((.....)))).((.....))...)))))))).)))).....((((....)))).....((..(((((((.......)))))))...))...... ( -27.10)
>mm5.chr13/37405505-37405387
AUCUCACUAUAAAGAACAGAUGCCUCUGAGGGGCUGCUGUGAGCUCUUCUGUUCUCUGUACAAUAUGCACACGUACAGAAAGGAAUUCACAUUCGAUGAAAACGUGAUAGCCAAGGCC
.............(((((((.((((.....)))).((.....))...)))))))(((((((...........)))))))..((...((((.............))))...))...... ( -29.32)
>canFam1.chr3/73260284-73260166
AUCUCACUAUAAAGAACAGAUGCCGUUUAGGGGCUGCUGUGAGCUCUUCUGUUCUCUGUACAAUAUGUACACGUACAAAAAGGAAUUCACAUUCGAUGAAAAUGUGAUAGCCAAGGCC
.......((((.((((((((....(((((.((....)).)))))...)))))))).)))).....((((....))))....((...(((((((.......)))))))...))...... ( -28.80)
>galGal2.chrW/1173457-1173575
AUCUCAGUAUAAAGAACAGAUGCUGUUUUGGGGCUGCUGUGAGUUCUUCUGUUCUUUGUAUAAUAUGCACAUGUAUAUGAGAGUGCACAUCACAUGAAAAUGUGAUAGCCAAGGCCCU
.((((.((((((((((((((.........((((((......)))))))))))))))))))).((((((....))))))))))......(((((((....))))))).((....))... ( -38.60)
>consensus
AUCUCACUAUAAAGAACAGAUGCCGUUUAGGGGCUGCUGUGAGCUCUUCUGUUCUCUGUACAAUAUGCACACGUACAAAAAGGAAUUCACAUUCGAUGAAAAUGUGAUAGCCAAGGCC__
............((((((((.........((((((......)))))))))))))).(((((...........)))))....((...(((((((.......)))))))...))........ (-21.70 = -21.95 +   0.25)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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