Structure #150837

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	130,057,238 - 130,057,355
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	81.43
Columns	120
Mean single MFE	-26.62
Consensus MFE	-14.96
Combinations/base pair	23 / 20 = 1.15
SCI	0.56
z-score	-2.58
RNA class probability	0.883333

This structure is part of cluster 83565

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.43
 Mean single sequence MFE: -26.62
 Consensus MFE: -14.96
 Energy contribution: -15.34
 Covariance contribution:   0.37
 Mean z-score:  -2.58
 Structure conservation index:   0.56
 SVM decision value:   0.93
 SVM RNA-class probability: 0.883333
 Prediction: RNA

######################################################################

>hg17.chr5/130057238-130057355
GCGAAGAUGGUUAACUGCUUCCCAAUUCUCACUCUCCCGUUAUGGUCAUUUUUAUCUGGGCAGUUUGCCACUCAGCUAAAAGCCUGUACUCCCCAGUCUCCCUUACUAUGUAGCAAU
((..((.((((.((((((...(((...........((......))...........))))))))).))))))..))....((.(((.......))).)).................. ( -19.85)
>mm5.chr18/60350039-60350156
CUAGAGAUGGUUAAUUGCUUCCCAAUUCCCAUUCUCCCUUUCUACCCAUUUUUAUCUGGGCAAUCUGCCACCCAGCUAAAAACCUGUAUUCCCCAGUCUCCCCUGCUGUGUGGCAAU
...(((((((..(((((.....))))).))).))))........((((........)))).....((((((.((((.......(((.......)))........)))).)))))).. ( -29.16)
>rn3.chr18/31533517-31533397
CUAGAGAUGGUUAAUUGCUUCCCAAUUCCCCUUCUCCCUCUCUACCCAUUUUUAUCUAGGCAGUCUGCCACCCAGCUAAAAAAAAUCUGAAUUCCCCAGUCUCCCCUGCUGUGUGGCAAU
...((((.((..(((((.....)))))..)).)))).............................((((((.((((..........(((.......)))........)))).)))))).. ( -27.27)
>canFam1.chr11/54961431-54961316
GCAGAAAUGGUUAAUUGCUUCCCAAUCCCCAUUCUCCCUUUCCACUCAUCUAUUUGGGCAAUUUGCCACCCAGCUAGAGGUCUGUAUUCCCCAGUUUCUCUGACUGUGUGGCAAU
((((((.(((...((((.....))))..)))))))......(((..........)))))...(((((((.(((.((((((.(((.......)))..)))))).))).))))))). ( -30.20)
>consensus
CCAGAGAUGGUUAAUUGCUUCCCAAUUCCCAUUCUCCCUUUCUACCCAUUUUUAUCUGGGCAAUCUGCCACCCAGCU___AAAAACCUGUAUUCCCCAGUCUCCCCUACUGUGUGGCAAU
.............(((((((.....................................))))))).((((((.((((..........(((.......)))........)))).)))))).. (-14.96 = -15.34 +   0.37)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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