Structure #150838

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	130,057,238 - 130,057,355
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	81.43
Columns	120
Mean single MFE	-37.51
Consensus MFE	-31.64
Combinations/base pair	53 / 36 = 1.47
SCI	0.84
z-score	-3.41
RNA class probability	0.99934

This structure is part of cluster 83565

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.43
 Mean single sequence MFE: -37.51
 Consensus MFE: -31.64
 Energy contribution: -29.32
 Covariance contribution:  -2.31
 Mean z-score:  -3.41
 Structure conservation index:   0.84
 SVM decision value:   3.52
 SVM RNA-class probability: 0.999340
 Prediction: RNA

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>hg17.chr5/130057355-130057238
AUUGCUACAUAGUAAGGGAGACUGGGGAGUACAGGCUUUUAGCUGAGUGGCAAACUGCCCAGAUAAAAAUGACCAUAACGGGAGAGUGAGAAUUGGGAAGCAGUUAACCAUCUUCGC
..((((((.(((((((((...(((.......))).))))).)))).))))))((((((((((..........((.....))...........))))...))))))............ ( -27.10)
>mm5.chr18/60350156-60350039
AUUGCCACACAGCAGGGGAGACUGGGGAAUACAGGUUUUUAGCUGGGUGGCAGAUUGCCCAGAUAAAAAUGGGUAGAAAGGGAGAAUGGGAAUUGGGAAGCAAUUAACCAUCUCUAG
.(((((((.((((...(((((((.(......).))))))).)))).))))))).(((((((........)))))))....(((((.(((.(((((.....)))))..)))))))).. ( -42.60)
>rn3.chr18/31533397-31533517
AUUGCCACACAGCAGGGGAGACUGGGGAAUUCAGAUUUUUUUUAGCUGGGUGGCAGACUGCCUAGAUAAAAAUGGGUAGAGAGGGAGAAGGGGAAUUGGGAAGCAAUUAACCAUCUCUAG
.(((((((.((((((((((((((((.....)))).)))))))).)))).))))))).(((((((........)))))))....(((((.((..(((((.....)))))..)).))))).. ( -46.20)
>canFam1.chr11/54961316-54961431
AUUGCCACACAGUCAGAGAAACUGGGGAAUACAGACCUCUAGCUGGGUGGCAAAUUGCCCAAAUAGAUGAGUGGAAAGGGAGAAUGGGGAUUGGGAAGCAAUUAACCAUUUCUGC
.(((((((.(((..((((...(((.......)))..))))..))).)))))))....(((.................)))(((((((.(((((.....)))))..))).)))).. ( -34.13)
>consensus
AUUGCCACACAGCAAGGGAGACUGGGGAAUACAGACUUUU___AGCUGGGUGGCAAACUGCCCAGAUAAAAAUGAGUAGAAAGGGAGAAUGGGAAUUGGGAAGCAAUUAACCAUCUCUAC
.(((((((.((((.((((...(((.......)))..))))....)))).))))))).(((((((........)))))))....(((((..(..(((((.....)))))..)..))))).. (-31.64 = -29.32 +  -2.31)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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