Structure #150839

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	130,057,278 - 130,057,380
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	80.81
Columns	105
Mean single MFE	-22.61
Consensus MFE	-14.56
Combinations/base pair	23 / 20 = 1.15
SCI	0.64
z-score	-3.58
RNA class probability	0.998774

This structure is part of cluster 83565

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 105
 Columns: 105
 Strand: +
 Mean pairwise identity:  80.81
 Mean single sequence MFE: -22.61
 Consensus MFE: -14.56
 Energy contribution: -15.87
 Covariance contribution:   1.31
 Mean z-score:  -3.58
 Structure conservation index:   0.64
 SVM decision value:   3.22
 SVM RNA-class probability: 0.998774
 Prediction: RNA

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>hg17.chr5/130057278-130057380
UAUGGUCAUUUUUAUCUGGGCAGUUUGCCACUCAGCUAAAAGCCUGUACUCCCCAGUCUCCCUUACUAUGUAGCAAUUCCUUGCCUCAAAUCCUCUAUAAAA
(((((..........(((((.(((........((((.....).))).))).)))))............((..((((....))))..))......)))))... ( -15.80)
>mm5.chr18/60350079-60350180
UCUACCCAUUUUUAUCUGGGCAAUCUGCCACCCAGCUAAAAACCUGUAUUCCCCAGUCUCCCCUGCUGUGUGGCAAUUCCUUUCUUCAAUCCCCUAUAAAA
....((((........)))).....((((((.((((.......(((.......)))........)))).)))))).......................... ( -21.46)
>rn3.chr18/31533541-31533437
UCUACCCAUUUUUAUCUAGGCAGUCUGCCACCCAGCUAAAAAAAAUCUGAAUUCCCCAGUCUCCCCUGCUGUGUGGCAAUUCCUUUCUUUAGUCCCCUAUAAAA
.................(((.(((.((((((.((((..........(((.......)))........)))).)))))))))))).................... ( -20.17)
>canFam1.chr11/54961456-54961356
UCCACUCAUCUAUUUGGGCAAUUUGCCACCCAGCUAGAGGUCUGUAUUCCCCAGUUUCUCUGACUGUGUGGCAAUUUCUUGCCUCAAAUCCUCUAUAAAA
...........((((((((((.(((((((.(((.((((((.(((.......)))..)))))).))).)))))))....))))).)))))........... ( -33.00)
>consensus
UCUACCCAUUUUUAUCUGGGCAAUCUGCCACCCAGCU___AAAAACCUGUAUUCCCCAGUCUCCCCUACUGUGUGGCAAUUCCUUGCCUC_AAUCCCCUAUAAAA
.................((((((.(((((((.((((..........(((.......)))........)))).)))))))....))))))................ (-14.56 = -15.87 +   1.31)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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