Structure #150841
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr5 |
| Strand | - |
| Position | 130,057,278 - 130,057,380 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 80.81 |
| Columns | 105 |
| Mean single MFE | -33.2 |
| Consensus MFE | -22.9 |
| Combinations/base pair | 37 / 25 = 1.48 |
| SCI | 0.69 |
| z-score | -4.32 |
| RNA class probability | 0.999554 |
This structure is part of cluster 83565
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 105 Columns: 105 Strand: + Mean pairwise identity: 80.81 Mean single sequence MFE: -33.20 Consensus MFE: -22.90 Energy contribution: -21.52 Covariance contribution: -1.37 Mean z-score: -4.32 Structure conservation index: 0.69 SVM decision value: 3.72 SVM RNA-class probability: 0.999554 Prediction: RNA ###################################################################### >hg17.chr5/130057380-130057278 UUUUAUAGAGGAUUUGAGGCAAGGAAUUGCUACAUAGUAAGGGAGACUGGGGAGUACAGGCUUUUAGCUGAGUGGCAAACUGCCCAGAUAAAAAUGACCAUA ...........(((((.((((.(...(((((((.(((((((((...(((.......))).))))).)))).))))))).))))))))))............. ( -27.70) >mm5.chr18/60350180-60350079 UUUUAUAGGGGAUUGAAGAAAGGAAUUGCCACACAGCAGGGGAGACUGGGGAAUACAGGUUUUUAGCUGGGUGGCAGAUUGCCCAGAUAAAAAUGGGUAGA .........................(((((((.((((...(((((((.(......).))))))).)))).))))))).(((((((........))))))). ( -32.00) >rn3.chr18/31533437-31533541 UUUUAUAGGGGACUAAAGAAAGGAAUUGCCACACAGCAGGGGAGACUGGGGAAUUCAGAUUUUUUUUAGCUGGGUGGCAGACUGCCUAGAUAAAAAUGGGUAGA ((((.(((....))).)))).....(((((((.((((((((((((((((.....)))).)))))))).)))).))))))).(((((((........))))))). ( -37.30) >canFam1.chr11/54961356-54961456 UUUUAUAGAGGAUUUGAGGCAAGAAAUUGCCACACAGUCAGAGAAACUGGGGAAUACAGACCUCUAGCUGGGUGGCAAAUUGCCCAAAUAGAUGAGUGGA .(((((.....(((((.(((((....(((((((.(((..((((...(((.......)))..))))..))).))))))).))))))))))..))))).... ( -35.80) >consensus UUUUAUAGAGGAUU_GAAGAAAGGAAUUGCCACACAGCAAGGGAGACUGGGGAAUACAGACUUUU___AGCUGGGUGGCAAACUGCCCAGAUAAAAAUGAGUAGA ..........................(((((((.((((.((((...(((.......)))..))))....)))).))))))).(((((((........))))))). (-22.90 = -21.52 + -1.37)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
