Structure #150887
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr5 |
Strand | + |
Position | 131,616,824 - 131,616,944 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 76.66 |
Columns | 120 |
Mean single MFE | -35.56 |
Consensus MFE | -25.62 |
Combinations/base pair | 31 / 28 = 1.11 |
SCI | 0.72 |
z-score | -2.13 |
RNA class probability | 0.982516 |
This structure is part of cluster 83596
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 76.66 Mean single sequence MFE: -35.56 Consensus MFE: -25.62 Energy contribution: -27.00 Covariance contribution: 1.38 Mean z-score: -2.13 Structure conservation index: 0.72 SVM decision value: 1.92 SVM RNA-class probability: 0.982516 Prediction: RNA ###################################################################### >hg17.chr5/131616824-131616944 CCACCCCCCCCACCCCCACCGUGUGAGAUGCCACUCCUCCCAACACCUUUCUACACCCAGGCCUCAGGGCCAGGGCCUCUCUGGGCCCAGCUAGGUAAACCUGUCCCCGCCCUGCUGCCU ....................(((((((.........)))...))))............((((..((((((..((((((....))))))...((((....)))).....))))))..)))) ( -36.20) >mm5.chr11/67935794-67935688 ACCCCUGUGUGAGAUGCUAUCCACCCCAACACCCUCCUUCUCCCAGGCCUCAGGGCUGGGGCCUCAUGGGCUCAGCUGGAUACACCUGUUCCCGCCCUGCCACCC ...((((.(.((((........................)))))))))...((((((.((((((.....))).(((.((....)).)))..)))))))))...... ( -31.26) >rn3.chr10/71234316-71234211 ACCCCUGUGUGAGAUGCUAUCCACCCCACACCCUUCUUCUCCCAGGCCUCAGGGCUGGGGCCUCAUGGGCUCAGCUGGGUACACCUGUCCCCGCCCUGCCACCC ...((((.(.((((.......................)))))))))...((((((..(((((.....)))))....(((.((....)).)))))))))...... ( -33.20) >canFam1.chr11/21933165-21933271 CCCCUUGUGUGAGAUGGCAGUCCUCCCAACAUCCUCCACUCCCAAGCCUCAGGGCUGGGGCCUCCCUGGGCCCAGCUGGGUAAACCUGCCCCUGCCCUGAUGCCU ......(((.((((((.............))).))))))......((.(((((((.(((((........((((....))))......))))).))))))).)).. ( -41.56) >consensus ______________ACCCCUGUGUGAGAUGCCAUCCACCCCAACACCCUCCUACUCCCAGGCCUCAGGGCUGGGGCCUC_AUGGGCCCAGCUGGGUAAACCUGUCCCCGCCCUGCCACCC ....................(((((.((((.....)))).).)))).............(((..((((((..((((((....)))))).((.((.....)).))....))))))..))). (-25.62 = -27.00 + 1.38)