Structure #150887

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	131,616,824 - 131,616,944
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	76.66
Columns	120
Mean single MFE	-35.56
Consensus MFE	-25.62
Combinations/base pair	31 / 28 = 1.11
SCI	0.72
z-score	-2.13
RNA class probability	0.982516

This structure is part of cluster 83596

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  76.66
 Mean single sequence MFE: -35.56
 Consensus MFE: -25.62
 Energy contribution: -27.00
 Covariance contribution:   1.38
 Mean z-score:  -2.13
 Structure conservation index:   0.72
 SVM decision value:   1.92
 SVM RNA-class probability: 0.982516
 Prediction: RNA

######################################################################

>hg17.chr5/131616824-131616944
CCACCCCCCCCACCCCCACCGUGUGAGAUGCCACUCCUCCCAACACCUUUCUACACCCAGGCCUCAGGGCCAGGGCCUCUCUGGGCCCAGCUAGGUAAACCUGUCCCCGCCCUGCUGCCU
....................(((((((.........)))...))))............((((..((((((..((((((....))))))...((((....)))).....))))))..)))) ( -36.20)
>mm5.chr11/67935794-67935688
ACCCCUGUGUGAGAUGCUAUCCACCCCAACACCCUCCUUCUCCCAGGCCUCAGGGCUGGGGCCUCAUGGGCUCAGCUGGAUACACCUGUUCCCGCCCUGCCACCC
...((((.(.((((........................)))))))))...((((((.((((((.....))).(((.((....)).)))..)))))))))...... ( -31.26)
>rn3.chr10/71234316-71234211
ACCCCUGUGUGAGAUGCUAUCCACCCCACACCCUUCUUCUCCCAGGCCUCAGGGCUGGGGCCUCAUGGGCUCAGCUGGGUACACCUGUCCCCGCCCUGCCACCC
...((((.(.((((.......................)))))))))...((((((..(((((.....)))))....(((.((....)).)))))))))...... ( -33.20)
>canFam1.chr11/21933165-21933271
CCCCUUGUGUGAGAUGGCAGUCCUCCCAACAUCCUCCACUCCCAAGCCUCAGGGCUGGGGCCUCCCUGGGCCCAGCUGGGUAAACCUGCCCCUGCCCUGAUGCCU
......(((.((((((.............))).))))))......((.(((((((.(((((........((((....))))......))))).))))))).)).. ( -41.56)
>consensus
______________ACCCCUGUGUGAGAUGCCAUCCACCCCAACACCCUCCUACUCCCAGGCCUCAGGGCUGGGGCCUC_AUGGGCCCAGCUGGGUAAACCUGUCCCCGCCCUGCCACCC
....................(((((.((((.....)))).).)))).............(((..((((((..((((((....)))))).((.((.....)).))....))))))..))). (-25.62 = -27.00 +   1.38)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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