Structure #150888

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	131,616,824 - 131,616,944
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	76.66
Columns	120
Mean single MFE	-45.4
Consensus MFE	-37.42
Combinations/base pair	36 / 31 = 1.16
SCI	0.82
z-score	-1.66
RNA class probability	0.920016

This structure is part of cluster 83596

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  76.66
 Mean single sequence MFE: -45.40
 Consensus MFE: -37.42
 Energy contribution: -37.80
 Covariance contribution:   0.38
 Mean z-score:  -1.66
 Structure conservation index:   0.82
 SVM decision value:   1.13
 SVM RNA-class probability: 0.920015
 Prediction: RNA

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>hg17.chr5/131616944-131616824
AGGCAGCAGGGCGGGGACAGGUUUACCUAGCUGGGCCCAGAGAGGCCCUGGCCCUGAGGCCUGGGUGUAGAAAGGUGUUGGGAGGAGUGGCAUCUCACACGGUGGGGGUGGGGGGGGUGG
((((..((((((..((..(((....)))..))(((((......)))))..))))))..))))............................((((((.(((.......)))...)))))). ( -44.40)
>mm5.chr11/67935688-67935794
GGGUGGCAGGGCGGGAACAGGUGUAUCCAGCUGAGCCCAUGAGGCCCCAGCCCUGAGGCCUGGGAGAAGGAGGGUGUUGGGGUGGAUAGCAUCUCACACAGGGGU
((((..(((((((((..(((.((....)).))).(((.....)))))).))))))..))))............((((.((((((.....))))))))))...... ( -42.50)
>rn3.chr10/71234211-71234316
GGGUGGCAGGGCGGGGACAGGUGUACCCAGCUGAGCCCAUGAGGCCCCAGCCCUGAGGCCUGGGAGAAGAAGGGUGUGGGGUGGAUAGCAUCUCACACAGGGGU
((((..((((((.(((.(((.((....)).))).(((.....)))))).))))))..))))............((((((((((.....))))))))))...... ( -47.30)
>canFam1.chr11/21933271-21933165
AGGCAUCAGGGCAGGGGCAGGUUUACCCAGCUGGGCCCAGGGAGGCCCCAGCCCUGAGGCUUGGGAGUGGAGGAUGUUGGGAGGACUGCCAUCUCACACAAGGGG
((((.(((((((.(((((.((....))...(((....)))....))))).))))))).))))....(((..(((((..((.....))..)))))..)))...... ( -47.40)
>consensus
AGGCAGCAGGGCGGGGACAGGUGUACCCAGCUGAGCCCAG_GAGGCCCCAGCCCUGAGGCCUGGGAGAAGAAGGGUGUUGGGAGGAAUAGCAUCUCACACAGGGGG______________
((((..((((((.(((.(((.((....)).))).(((......)))))).))))))..))))............((((.((((((.....)))))))))).................... (-37.42 = -37.80 +   0.38)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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