Structure #150891

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	131,616,864 - 131,616,984
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	81.64
Columns	120
Mean single MFE	-44.78
Consensus MFE	-32.71
Combinations/base pair	49 / 36 = 1.36
SCI	0.73
z-score	-2.45
RNA class probability	0.979687

This structure is part of cluster 83596

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.64
 Mean single sequence MFE: -44.79
 Consensus MFE: -32.71
 Energy contribution: -32.77
 Covariance contribution:   0.06
 Mean z-score:  -2.45
 Structure conservation index:   0.73
 SVM decision value:   1.84
 SVM RNA-class probability: 0.979687
 Prediction: RNA

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>hg17.chr5/131616864-131616984
CAACACCUUUCUACACCCAGGCCUCAGGGCCAGGGCCUCUCUGGGCCCAGCUAGGUAAACCUGUCCCCGCCCUGCUGCCUGGCAACCCCUUUGUUGGGUCCCAGAGCAGACUGGUUUUCU
....((((..((.......((((....)))).((((((....))))))))..))))(((((.(((...((.(((..(((..((((.....))))..)))..))).)).))).)))))... ( -48.50)
>mm5.chr11/67935834-67935715
CAACACCCUCCUUCUCCCAGGCCUCAGGGCUGGGGCCUCAUGGGCUCAGCUGGAUACACCUGUUCCCGCCCUGCCACCCAAGAGUCUCUUUGUUGGGUCUCAGAACAGGCUGUUUUCCU
......((((((......)))....)))((((((.((....)).)))))).(((.((((((((((......((..((((((.((.....)).))))))..))))))))).)))..))). ( -40.70)
>rn3.chr10/71234356-71234238
CACACCCUUCUUCUCCCAGGCCUCAGGGCUGGGGCCUCAUGGGCUCAGCUGGGUACACCUGUCCCCGCCCUGCCACCCAAGAGUCUCUUUGUUGGGUCCCAAAGCAGGCUGUUUUCCU
.(((.(((.(((......(((...(((((..(((((.....)))))....(((.((....)).)))))))))))((((((.((.....)).))))))....))).))).)))...... ( -41.60)
>canFam1.chr11/21933192-21933311
CAACAUCCUCCACUCCCAAGCCUCAGGGCUGGGGCCUCCCUGGGCCCAGCUGGGUAAACCUGCCCCUGCCCUGAUGCCUGGCAGCCCCUUUGUUGGGACCCAGAGUAGACAGGUUUUCU
......((((.(((((((.((.(((((((.(((((........((((....))))......))))).))))))).)).)))....(((......))).....)))).))..))...... ( -48.34)
>consensus
CAACACCCUCCUACUCCCAGGCCUCAGGGCUGGGGCCUC_AUGGGCCCAGCUGGGUAAACCUGUCCCCGCCCUGCCACCCAACAGCCCCUUUGUUGGGUCCCAGAGCAGACUGGUUUCCU
....((((...........((((....)))).((((((....))))))....))))(((((.(((...((.(((..(((((((((.....)))))))))..))).)).))).)))))... (-32.71 = -32.77 +   0.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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