Structure #150899

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	131,616,904 - 131,617,021
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	80.48
Columns	117
Mean single MFE	-45.33
Consensus MFE	-33.45
Combinations/base pair	50 / 39 = 1.28
SCI	0.74
z-score	-1.91
RNA class probability	0.874422

This structure is part of cluster 83596

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 117
 Columns: 117
 Strand: +
 Mean pairwise identity:  80.48
 Mean single sequence MFE: -45.33
 Consensus MFE: -33.45
 Energy contribution: -35.95
 Covariance contribution:   2.50
 Mean z-score:  -1.91
 Structure conservation index:   0.74
 SVM decision value:   0.89
 SVM RNA-class probability: 0.874421
 Prediction: RNA

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>hg17.chr5/131616904-131617021
CUGGGCCCAGCUAGGUAAACCUGUCCCCGCCCUGCUGCCUGGCAACCCCUUUGUUGGGUCCCAGAGCAGACUGGUUUUCUCUGUGAAAACAGAGAAAGAGCAGGUCUGACAGGGGUG
(((....))).((((....)))).((((((.(((..(((..((((.....))))..)))..))).))(((((..((((((((((....))))))))))....)))))....)))).. ( -49.90)
>mm5.chr11/67935871-67935754
AUGGGCUCAGCUGGAUACACCUGUUCCCGCCCUGCCACCCAAGAGUCUCUUUGUUGGGUCUCAGAACAGGCUGUUUUCCUCUGUGAAAACAGAAUCGGAGCAGGUCUGACGAGGGUG
..(((..(((.((....)).)))..)))(((((...((((((.((.....)).)))))).......((((((...(((((((((....)))))...))))..))))))...))))). ( -43.90)
>rn3.chr10/71234393-71234276
AUGGGCUCAGCUGGGUACACCUGUCCCCGCCCUGCCACCCAAGAGUCUCUUUGUUGGGUCCCAAAGCAGGCUGUUUUCCUCUGUGAAAACAGAAUCAGAGCAGGUCUGACAAGGGUG
...(((...((.(((.((....))))).))...)))((((((.((.....)).))))))(((....(((((((((((..(((((....)))))...)))))).)))))....))).. ( -44.00)
>canFam1.chr11/21933231-21933343
CUGGGCCCAGCUGGGUAAACCUGCCCCUGCCCUGAUGCCUGGCAGCCCCUUUGUUGGGACCCAGAGUAGACAGGUUUUCUCUGUGAAAGACAAAGCAAGUCUGACAGGGGUG
(((((((((((.(((.....(((((...((......))..))))).)))...)))))).))))).((((((..(((((.(((.....))).)))))..)))).))....... ( -43.50)
>consensus
AUGGGCCCAGCUGGGUAAACCUGUCCCCGCCCUGCCACCCAACAGCCCCUUUGUUGGGUCCCAGAGCAGACUGGUUUCCUCUGUGAAAACAGAAACAGAGCAGGUCUGACAAGGGUG
..(((..(((.((....)).)))..)))(((((...(((((((((.....))))))))).......((((((.(((((((((((....))))))..))))).))))))...))))). (-33.45 = -35.95 +   2.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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