Structure #152311

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,210,825 - 141,210,945
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	79.41
Columns	120
Mean single MFE	-44.75
Consensus MFE	-25.67
Combinations/base pair	25 / 24 = 1.04
SCI	0.57
z-score	-2.43
RNA class probability	0.927609

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.41
 Mean single sequence MFE: -44.75
 Consensus MFE: -25.67
 Energy contribution: -28.42
 Covariance contribution:   2.75
 Mean z-score:  -2.43
 Structure conservation index:   0.57
 SVM decision value:   1.18
 SVM RNA-class probability: 0.927609
 Prediction: RNA

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>hg17.chr5/141210825-141210945
GCAGGGCAGAGAAACCCCCAUAGGAGAGAUGGGGGUAGGGCCAGAAACAUCCCUUCCCAGACGUGUUUCAGAGAUAGCCCCCUUCCCUGGGAAGAGAGAUGGCCCGAAACUGACUUGCCU
(((((.(((....((((((((.......)))))))).((((((......((.((((((((..........................)))))))).))..))))))....))).))))).. ( -49.67)
>canFam1.chr2/37411756-37411876
GCAGGUCAGAGACACCCCCAGAGGAGAGAUGCAGGGAGGGUCAGGAAUAUCCCUUCCCAGACAUGCUUCAGAGAUAGCCCCCUUCCCUGGGAAGAGAGAUGGCCCAAGACUGACAUGCCU
(((.(((((.(((.(((((..............))).))))).((..(((((((((((((....(((........)))........)))))))).).))))..))....))))).))).. ( -41.34)
>mm5.chr18/38629726-38629835
GCAGGGCAGACACUCCCAUCGGAGAGAUGGGGGUCAGAGACUUCUCUUCCAGAGAGCUUCAGAGACAACUCUUGCCUGGAAAGAGAGCCGGCCCAAGACUGACUUGUCU
...((((....(((((((((.....))))))))).......(((((((((((...((...((((....)))).)))))).)))))))...)))).((((......)))) ( -42.90)
>rn3.chr18/524-633
GCAGGGCAGACACUCCCAUCUGAGAGAUGGAGGUCAGAGACUUCUCUUCCAGGGAGCUUCAGAGACAGCUCUUGCCUGGAAAGAGAGCCGGCCCAAGACUGACUUGUCU
...((((.(((.((((.(((.....))))))))))......(((((((((((((((((........)))))...))))).)))))))...)))).((((......)))) ( -45.10)
>consensus
GCAGGGC__AGACACCCCCAUAGGAGAGAUGGAGGU_____CAGAAACAUCCCUU_CCAGA_GAGCUUCAGAGACAG__CCCUUCCCUGGAAAGAGAGACGGCCCAAGACUGACUUGCCU
...((((......(((((((((.....))))))))).............(((((((((((..........................)))))))))))....))))............... (-25.67 = -28.42 +   2.75) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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