Structure #152316

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,210,865 - 141,210,985
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	86.01
Columns	120
Mean single MFE	-44.22
Consensus MFE	-33.03
Combinations/base pair	29 / 28 = 1.04
SCI	0.75
z-score	-3.07
RNA class probability	0.984979

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  86.01
 Mean single sequence MFE: -44.22
 Consensus MFE: -33.03
 Energy contribution: -34.59
 Covariance contribution:   1.56
 Mean z-score:  -3.07
 Structure conservation index:   0.75
 SVM decision value:   1.99
 SVM RNA-class probability: 0.984979
 Prediction: RNA

######################################################################

>hg17.chr5/141210865-141210985
CCAGAAACAUCCCUUCCCAGACGUGUUUCAGAGAUAGCCCCCUUCCCUGGGAAGAGAGAUGGCCCGAAACUGACUUGCCUUAAGUACUCCCAGGAACCCUGGGAGGAAAACAGGCUCCCC
.......(((((((((((((..........................)))))))).).))))...............((((......((((((((...))))))))......))))..... ( -37.17)
>canFam1.chr2/37411796-37411916
UCAGGAAUAUCCCUUCCCAGACAUGCUUCAGAGAUAGCCCCCUUCCCUGGGAAGAGAGAUGGCCCAAGACUGACAUGCCUUAAGUACUCCCAGGAACCCUGGGAGGAAAACAGGCUCCCC
...((..(((((((((((((....(((........)))........)))))))).).))))..))...........((((......((((((((...))))))))......))))..... ( -40.90)
>mm5.chr18/38629759-38629875
CAGAGACUUCUCUUCCAGAGAGCUUCAGAGACAACUCUUGCCUGGAAAGAGAGCCGGCCCAAGACUGACUUGUCUUAGGUACUCCCAGGAACCCUGGGAGGCAAACAGGCUCCCC
..(((....)))((((((...((...((((....)))).))))))))...(((((.(((.(((((......))))).))).((((((((...)))))))).......)))))... ( -46.90)
>rn3.chr18/557-673
CAGAGACUUCUCUUCCAGGGAGCUUCAGAGACAGCUCUUGCCUGGAAAGAGAGCCGGCCCAAGACUGACUUGUCUUAGGUACUCCCAGGAACCCUGGGAGGCAAACAGGCUCCCC
..(((....)))((((((((((((........)))))...)))))))...(((((.(((.(((((......))))).))).((((((((...)))))))).......)))))... ( -51.90)
>consensus
_CAGAAACAUCCCUU_CCAGA_GAGCUUCAGAGACAG__CCCUUCCCUGGAAAGAGAGACGGCCCAAGACUGACUUGCCUUAAGUACUCCCAGGAACCCUGGGAGGAAAACAGGCUCCCC
.........(((((((((((..........................)))))))))))...((((.(((((......))))).....((((((((...)))))))).......)))).... (-33.03 = -34.59 +   1.56)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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