Structure #152322

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,210,905 - 141,211,025
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	89.58
Columns	120
Mean single MFE	-51.82
Consensus MFE	-43.41
Combinations/base pair	38 / 33 = 1.15
SCI	0.84
z-score	-2.98
RNA class probability	0.988237

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  89.58
 Mean single sequence MFE: -51.83
 Consensus MFE: -43.41
 Energy contribution: -42.85
 Covariance contribution:  -0.56
 Mean z-score:  -2.98
 Structure conservation index:   0.84
 SVM decision value:   2.11
 SVM RNA-class probability: 0.988237
 Prediction: RNA

######################################################################

>hg17.chr5/141210905-141211025
CCUUCCCUGGGAAGAGAGAUGGCCCGAAACUGACUUGCCUUAAGUACUCCCAGGAACCCUGGGAGGAAAACAGGCUCCCCAGAGAGCCUGGGUAAUUGGGGGAGACAUGCUCCCGUGGUC
.(((((...)))))......(((((....(..(.(((((.......((((((((...)))))))).....(((((((......)))))))))))))..)(((((.....)))))).)))) ( -51.50)
>canFam1.chr2/37411836-37411953
CCUUCCCUGGGAAGAGAGAUGGCCCAAGACUGACAUGCCUUAAGUACUCCCAGGAACCCUGGGAGGAAAACAGGCUCCCCAGAGAGCCUGGGUAGGGGGAGACAUGCUCCCAUGGUC
.(((((...)))))......((((.........(.((((.......((((((((...)))))))).....(((((((......))))))))))).)(((((.....)))))..)))) ( -48.00)
>mm5.chr18/38629795-38629915
UCUUGCCUGGAAAGAGAGCCGGCCCAAGACUGACUUGUCUUAGGUACUCCCAGGAACCCUGGGAGGCAAACAGGCUCCCCAGAGAGCCUGGGUAGGGAAGGGAGACAUGUUCCCAUGGUC
(((((((..........(((.(((.(((((......))))).)))..(((((((...))))))))))...(((((((......))))))))))))))..(((((.....)))))...... ( -53.50)
>rn3.chr18/593-713
UCUUGCCUGGAAAGAGAGCCGGCCCAAGACUGACUUGUCUUAGGUACUCCCAGGAACCCUGGGAGGCAAACAGGCUCCCCAGAGAGCCUGGGUAGGGAAGGGAGACAUGUUCCCGUGGCC
....(((........(((((.(((.(((((......))))).))).((((((((...)))))))).......)))))(((((.....)))))..(((((.(....)...)))))..))). ( -54.30)
>consensus
CCUUCCCUGGAAAGAGAGACGGCCCAAGACUGACUUGCCUUAAGUACUCCCAGGAACCCUGGGAGGAAAACAGGCUCCCCAGAGAGCCUGGGUAGGGAAGGGAGACAUGCUCCCAUGGUC
(((.....))).........((((.........((((((.......((((((((...)))))))).....(((((((......)))))))))))))...(((((.....)))))..)))) (-43.41 = -42.85 +  -0.56) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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