Structure #152328

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,576,239 - 141,576,292
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	79.56
Columns	53
Mean single MFE	-18.35
Consensus MFE	-13.3
Combinations/base pair	30 / 21 = 1.43
SCI	0.72
z-score	-3.23
RNA class probability	0.999473

This structure is part of cluster 84325

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 53
 Columns: 53
 Strand: +
 Mean pairwise identity:  79.56
 Mean single sequence MFE: -18.35
 Consensus MFE: -13.30
 Energy contribution: -12.68
 Covariance contribution:  -0.63
 Mean z-score:  -3.23
 Structure conservation index:   0.72
 SVM decision value:   3.63
 SVM RNA-class probability: 0.999473
 Prediction: RNA

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>hg17.chr5/141576239-141576292
UCUGUUUCAAUCUGAGCUUUUGUAAGGAUGCAGAUUUGGGACUUGGAACAGGA
(((((((((((((.((..((((((....)))))).)).))).)))))))))). ( -17.10)
>mm5.chr18/38961703-38961756
UCUGUUCUAAUCUGCACUUUUGCAAGAACGCAGAUGUGAGACUUGGAGCGGGA
(((((((((((((.(((.(((((......))))).)))))).)))))))))). ( -21.90)
>rn3.chr18/31493238-31493290
UCUGUUCUAAUCUGCACUUUUGCAAGAACGCAGAUGUGAGACUUGGAACGGA
(((((((((((((.(((.(((((......))))).)))))).)))))))))) ( -22.00)
>canFam1.chr2/37723411-37723461
UCUUUCCAAUCUGAGCUUUUAUAGAGGCAGACUGGGAACUUGGAACAGGA
..((((((.((((..(((.....))).)))).))))))((((...)))). ( -12.40)
>consensus
UCUGUUCCAAUCUGAACUUUUGCAAGAACGCAGAUGUGAGACUUGGAACAGGA
((((((((((((((((..(((((......)))))))))))..)))))))))). (-13.30 = -12.68 +  -0.63) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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