Structure #152329

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	141,210,905 - 141,211,025
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	89.58
Columns	120
Mean single MFE	-50.07
Consensus MFE	-46.44
Combinations/base pair	38 / 34 = 1.12
SCI	0.93
z-score	-2.79
RNA class probability	0.996444

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  89.58
 Mean single sequence MFE: -50.08
 Consensus MFE: -46.44
 Energy contribution: -46.00
 Covariance contribution:  -0.44
 Mean z-score:  -2.79
 Structure conservation index:   0.93
 SVM decision value:   2.70
 SVM RNA-class probability: 0.996444
 Prediction: RNA

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>hg17.chr5/141211025-141210905
GACCACGGGAGCAUGUCUCCCCCAAUUACCCAGGCUCUCUGGGGAGCCUGUUUUCCUCCCAGGGUUCCUGGGAGUACUUAAGGCAAGUCAGUUUCGGGCCAUCUCUCUUCCCAGGGAAGG
..((..(((((.....)))))..............((((((((((((((......((((((((...))))))))......))))..(((.......)))........)))))))))).)) ( -45.80)
>canFam1.chr2/37411953-37411836
GACCAUGGGAGCAUGUCUCCCCCUACCCAGGCUCUCUGGGGAGCCUGUUUUCCUCCCAGGGUUCCUGGGAGUACUUAAGGCAUGUCAGUCUUGGGCCAUCUCUCUUCCCAGGGAAGG
......(((((.....)))))(((.((((((((((....)))))))......((((((((...))))))))..((((((((......))))))))...............))).))) ( -48.30)
>mm5.chr18/38629915-38629795
GACCAUGGGAACAUGUCUCCCUUCCCUACCCAGGCUCUCUGGGGAGCCUGUUUGCCUCCCAGGGUUCCUGGGAGUACCUAAGACAAGUCAGUCUUGGGCCGGCUCUCUUUCCAGGCAAGA
(((.(((....))))))...(((.(((..(((((..(((((((..((......))..)))))))..)))))((((.((((((((......))))))))...)))).......))).))). ( -53.00)
>rn3.chr18/713-593
GGCCACGGGAACAUGUCUCCCUUCCCUACCCAGGCUCUCUGGGGAGCCUGUUUGCCUCCCAGGGUUCCUGGGAGUACCUAAGACAAGUCAGUCUUGGGCCGGCUCUCUUUCCAGGCAAGA
.(((..((((.......))))........(((((..(((((((..((......))..)))))))..)))))((((.((((((((......))))))))...))))........))).... ( -53.20)
>consensus
GACCACGGGAACAUGUCUCCCCCCCCUACCCAGGCUCUCUGGGGAGCCUGUUUGCCUCCCAGGGUUCCUGGGAGUACCUAAGACAAGUCAGUCUUGGGCCAGCUCUCUUCCCAGGCAAGA
......(((((.....))))).........((((((((....))))))))(((((((((((((...)))))))...((((((((......))))))))...............)))))). (-46.44 = -46.00 +  -0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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