Structure #152336

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,210,945 - 141,211,064
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	89.11
Columns	120
Mean single MFE	-56.4
Consensus MFE	-46.1
Combinations/base pair	35 / 33 = 1.06
SCI	0.82
z-score	-3.88
RNA class probability	0.988896

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  89.11
 Mean single sequence MFE: -56.40
 Consensus MFE: -46.10
 Energy contribution: -46.60
 Covariance contribution:   0.50
 Mean z-score:  -3.88
 Structure conservation index:   0.82
 SVM decision value:   2.14
 SVM RNA-class probability: 0.988896
 Prediction: RNA

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>hg17.chr5/141210945-141211064
UAAGUACUCCCAGGAACCCUGGGAGGAAAACAGGCUCCCCAGAGAGCCUGGGUAAUUGGGGGAGACAUGCUCCCGUGGUCCUCAGCGGGAACACAUGUCCCCCGGAGACUCCCAAGGGG
......((((((((...))))))))......((((((......))))))(((...((.((((.((((((.((((((........))))))...)))))))))).))....)))...... ( -58.10)
>canFam1.chr2/37411876-37411993
UAAGUACUCCCAGGAACCCUGGGAGGAAAACAGGCUCCCCAGAGAGCCUGGGUAGGGGGAGACAUGCUCCCAUGGUCCCCGGAGGGAAUACAUGUCCCUCCAGAGACUCCCAAAGGG
......((((((((...)))))))).....(((((((......)))))))((.(((((((..((((....)))).)))))(((((((.......))))))).....)).))...... ( -56.70)
>mm5.chr18/38629835-38629953
UAGGUACUCCCAGGAACCCUGGGAGGCAAACAGGCUCCCCAGAGAGCCUGGGUAGGGAAGGGAGACAUGUUCCCAUGGUCCCCGGUGGGAAACCAUGUCCCCAGAGACUCCCAAGGGG
......((((((((...))))))))((...(((((((......))))))).)).((((.(((.(((((((((((((.(....).)))))))..)))))))))......))))...... ( -56.30)
>rn3.chr18/633-751
UAGGUACUCCCAGGAACCCUGGGAGGCAAACAGGCUCCCCAGAGAGCCUGGGUAGGGAAGGGAGACAUGUUCCCGUGGCCCCCGGUGGGAAACCAUGUCCCCAGAGACUCCCAAGGGG
...((.((((((((...))))))))))...(((((((......)))))))(((.(((((.(....)...)))))...)))(((.((((....))))(((......)))......))). ( -54.50)
>consensus
UAAGUACUCCCAGGAACCCUGGGAGGAAAACAGGCUCCCCAGAGAGCCUGGGUAGGGAAGGGAGACAUGCUCCCAUGGUCCCCGGUGGGAAAACAUGU__CCCCAGAGACUCCCAAGGGG
......((((((((...)))))))).....(((((((......))))))).........(((((((((((((((((.(....).)))))))..)))))...........)))))...... (-46.10 = -46.60 +   0.50) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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