Structure #152337

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	141,210,945 - 141,211,064
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	89.11
Columns	120
Mean single MFE	-60.4
Consensus MFE	-47.74
Combinations/base pair	41 / 37 = 1.11
SCI	0.79
z-score	-4.77
RNA class probability	0.961223

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  89.11
 Mean single sequence MFE: -60.40
 Consensus MFE: -47.74
 Energy contribution: -48.18
 Covariance contribution:   0.44
 Mean z-score:  -4.77
 Structure conservation index:   0.79
 SVM decision value:   1.51
 SVM RNA-class probability: 0.961223
 Prediction: RNA

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>hg17.chr5/141211064-141210945
CCCCUUGGGAGUCUCCGGGGGACAUGUGUUCCCGCUGAGGACCACGGGAGCAUGUCUCCCCCAAUUACCCAGGCUCUCUGGGGAGCCUGUUUUCCUCCCAGGGUUCCUGGGAGUACUUA
..(((((((((.....((((((.(((((((((((.((.....))))))))))))).)))))).......((((((((....)))))))).....)))))))))(((....)))...... ( -62.90)
>canFam1.chr2/37411993-37411876
CCCUUUGGGAGUCUCUGGAGGGACAUGUAUUCCCUCCGGGGACCAUGGGAGCAUGUCUCCCCCUACCCAGGCUCUCUGGGGAGCCUGUUUUCCUCCCAGGGUUCCUGGGAGUACUUA
.....((((.(((((((((((((.......)))))))))))))...(((((.....)))))))))..((((((((....)))))))).....((((((((...))))))))...... ( -62.30)
>mm5.chr18/38629953-38629835
CCCCUUGGGAGUCUCUGGGGACAUGGUUUCCCACCGGGGACCAUGGGAACAUGUCUCCCUUCCCUACCCAGGCUCUCUGGGGAGCCUGUUUGCCUCCCAGGGUUCCUGGGAGUACCUA
......(((((.....(((((((((...(((((..(....)..))))).))))))))).)))))..((((((..(((((((..((......))..)))))))..))))))........ ( -59.60)
>rn3.chr18/751-633
CCCCUUGGGAGUCUCUGGGGACAUGGUUUCCCACCGGGGGCCACGGGAACAUGUCUCCCUUCCCUACCCAGGCUCUCUGGGGAGCCUGUUUGCCUCCCAGGGUUCCUGGGAGUACCUA
((((..((((((((.((((((..((((..((....))..)))).((((.......)))).))))))...)))))))).))))...........((((((((...))))))))...... ( -56.80)
>consensus
CCCCUUGGGAGUCUCUGGGG__ACAUGGUUUCCCACCGGGGACCACGGGAACAUGUCUCCCCCCCCUACCCAGGCUCUCUGGGGAGCCUGUUUGCCUCCCAGGGUUCCUGGGAGUACCUA
..(((((((((.....(((((.(((((..((((((..(....)..))))))))))).)))))........((((((((....)))))))).....)))))))))(((....)))...... (-47.74 = -48.18 +   0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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