Structure #152341

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	+
Position	141,210,985 - 141,211,102
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	81.83
Columns	120
Mean single MFE	-51.66
Consensus MFE	-32.34
Combinations/base pair	33 / 30 = 1.10
SCI	0.63
z-score	-3.42
RNA class probability	0.99542

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.83
 Mean single sequence MFE: -51.65
 Consensus MFE: -32.34
 Energy contribution: -33.65
 Covariance contribution:   1.31
 Mean z-score:  -3.42
 Structure conservation index:   0.63
 SVM decision value:   2.57
 SVM RNA-class probability: 0.995420
 Prediction: RNA

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>hg17.chr5/141210985-141211102
AGAGAGCCUGGGUAAUUGGGGGAGACAUGCUCCCGUGGUCCUCAGCGGGAACACAUGUCCCCCGGAGACUCCCAAGGGGAGAGAUAGGGCCUAGAGAGACCCCAGAGGUGAGGGAUG
.......((((((..((.((((.((((((.((((((........))))))...)))))))))).))..(((((...))))).......)))))).....(((((....)).)))... ( -47.70)
>canFam1.chr2/37411916-37412032
AGAGAGCCUGGGUAGGGGGAGACAUGCUCCCAUGGUCCCCGGAGGGAAUACAUGUCCCUCCAGAGACUCCCAAAGGGAGAGAUAGGGCCUAGGGAGCCCCCAGAGGUGAGAGAUGC
.....((((..(..((((....)..((((((..(((((..(((((((.......))))))).....(((((...))))).....)))))..))))))))))..))))......... ( -51.40)
>mm5.chr18/38629875-38629992
AGAGAGCCUGGGUAGGGAAGGGAGACAUGUUCCCAUGGUCCCCGGUGGGAAACCAUGUCCCCAGAGACUCCCAAGGGGAGACAUAAGGAGUAGGGAGGUUCCCCCAGGUUCAGGAUG
...(((((((((...(((((((.(((((((((((((.(....).)))))))..)))))))))....(((((.....(....)....))))).......)))))))))))))...... ( -53.80)
>rn3.chr18/673-787
AGAGAGCCUGGGUAGGGAAGGGAGACAUGUUCCCGUGGCCCCCGGUGGGAAACCAUGUCCCCAGAGACUCCCAAGGGGAGAUAUAAGGAGUAGGGAGCCCCCAGGUUCAGGAUG
...(((((((((..(((((.(....)...)))))..(((.(((.((((....)))).(((.......(((((...)))))......)))...))).))))))))))))...... ( -53.72)
>consensus
AGAGAGCCUGGGUAGGGAAGGGAGACAUGCUCCCAUGGUCCCCGGUGGGAAAACAUGU__CCCCAGAGACUCCCAAGGGGAGAGAUAAGGACUAGGGA_GCCCCCAGAGGUGAAGGAUG_
...(((((((((.......(((..((((((((((((.(....).)))))))..)))))...))).....(((((...)))))....................)))..))))))....... (-32.34 = -33.65 +   1.31) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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