Structure #152345

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	141,211,025 - 141,211,140
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	75.93
Columns	120
Mean single MFE	-47.07
Consensus MFE	-28.27
Combinations/base pair	40 / 30 = 1.33
SCI	0.6
z-score	-2.33
RNA class probability	0.982101

This structure is part of cluster 84280

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  75.93
 Mean single sequence MFE: -47.08
 Consensus MFE: -28.27
 Energy contribution: -29.28
 Covariance contribution:   1.00
 Mean z-score:  -2.33
 Structure conservation index:   0.60
 SVM decision value:   1.91
 SVM RNA-class probability: 0.982101
 Prediction: RNA

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>hg17.chr5/141211140-141211025
CAUGUUUCACAUUCCGGGGUGGGGGGAAGUUCUCUGGGCAUCCCUCACCUCUGGGGUCUCUCUAGGCCCUAUCUCUCCCCUUGGGAGUCUCCGGGGGACAUGUGUUCCCGCUGAG
...............(((((((((((..(((.....))).)))))))))))((((((((....))))))))...(((((...))))).(((.(((((((....)))))).).))) ( -48.30)
>canFam1.chr2/37412065-37411953
CGUGUCUCACAUCCCCGGGGGAGGGUCUCUGGGGCAUCUCUCACCUCUGGGGGCUCCCUAGGCCCUAUCUCUCCCUUUGGGAGUCUCUGGAGGGACAUGUAUUCCCUCCGGG
.(((...))).((((..((((((((....((((((...........((((((...)))))))))))).))))))))..))))....(((((((((.......))))))))). ( -53.60)
>mm5.chr18/38630028-38629915
AGCAUCUCUCACAUCAGGAGGGGAGCUGUUUCUAGGCAUCCUGAACCUGGGGGAACCUCCCUACUCCUUAUGUCUCCCCUUGGGAGUCUCUGGGGACAUGGUUUCCCACCGGG
..........((((.((((((((((...(..(((((.........)))))..)...)))))..))))).))))..(((..((((((.((.((....)).)).))))))..))) ( -44.60)
>rn3.chr18/823-713
AGCAUCUCUCACAUCAGGAGGGGAGCUGUUUCUAGGCAUCCUGAACCUGGGGGCUCCCUACUCCUUAUAUCUCCCCUUGGGAGUCUCUGGGGACAUGGUUUCCCACCGGG
...............((((((((((((...((((((.........)))))))))))))..))))).......(((..((((((.((.((....)).)).))))))..))) ( -41.80)
>consensus
__CAUCUCUCACAUC___AGGAGGGGAGCUGUU_UCUAGG_CAUCCCGAACCUCUGGGGGC_UCCCUACGCCCUAUCUCUCCCCUUGGGAGUCUCUGGGG__ACAUGGUUUCCCACCGGG
...................(((((((((((((...(((((...((((........)))).....))))).(((.....(((((...))))).....))).....)))))))))))))... (-28.27 = -29.28 +   1.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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